Variant report

Variant	rs61993116
Chromosome Location	chr14:79861660-79861661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10444685	1.00[ASN][1000 genomes]
rs11625620	1.00[ASN][1000 genomes]
rs11625769	1.00[ASN][1000 genomes]
rs12147236	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12147614	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17836166	1.00[ASN][1000 genomes]
rs2009367	1.00[ASN][1000 genomes]
rs61519036	1.00[ASN][1000 genomes]
rs61993137	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61993138	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61993139	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61993140	1.00[ASN][1000 genomes]
rs61993141	1.00[ASN][1000 genomes]
rs61993159	1.00[ASN][1000 genomes]
rs61995163	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61995166	1.00[ASN][1000 genomes]
rs61995177	1.00[ASN][1000 genomes]
rs61995185	1.00[ASN][1000 genomes]
rs8005235	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv902111	chr14:79807197-79890677	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79856800-79873800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:79860800-79861800	Enhancers	Duodenum Smooth Muscle	Duodenum
3	chr14:79860800-79862400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr14:79861000-79861800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:79861000-79861800	Enhancers	Placenta Amnion	Placenta Amnion
6	chr14:79861200-79861800	Enhancers	Stomach Smooth Muscle	stomach
7	chr14:79861200-79861800	Enhancers	NH-A	brain
8	chr14:79861200-79861800	Enhancers	NHLF	lung
9	chr14:79861200-79862000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:79861200-79862000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr14:79861400-79861800	Enhancers	Fetal Lung	lung
12	chr14:79861600-79861800	Enhancers	Rectal Smooth Muscle	rectum
13	chr14:79861600-79872600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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