Variant report

Variant	rs61993140
Chromosome Location	chr14:79910542-79910543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10444685	1.00[ASN][1000 genomes]
rs11625620	1.00[ASN][1000 genomes]
rs11625769	1.00[ASN][1000 genomes]
rs12147236	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12147614	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17836166	1.00[ASN][1000 genomes]
rs2009367	1.00[ASN][1000 genomes]
rs61519036	1.00[ASN][1000 genomes]
rs61993116	1.00[ASN][1000 genomes]
rs61993137	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61993138	1.00[ASN][1000 genomes]
rs61993139	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61993141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61993159	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61995163	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61995166	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61995177	1.00[ASN][1000 genomes]
rs61995185	1.00[ASN][1000 genomes]
rs7144418	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8005235	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79903600-79911800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr14:79906600-79927000	Weak transcription	Aorta	Aorta
3	chr14:79908200-79910600	Enhancers	Colon Smooth Muscle	Colon
4	chr14:79908400-79910800	Enhancers	Fetal Lung	lung
5	chr14:79908600-79910600	Enhancers	Rectal Smooth Muscle	rectum
6	chr14:79909600-79912200	Weak transcription	Psoas Muscle	Psoas
7	chr14:79910000-79911000	Enhancers	HSMMtube	muscle
8	chr14:79910200-79910600	Enhancers	Fetal Stomach	stomach
9	chr14:79910200-79910600	Flanking Active TSS	Stomach Smooth Muscle	stomach

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