Variant report

Variant	rs61993138
Chromosome Location	chr14:79902380-79902381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10444685	1.00[ASN][1000 genomes]
rs11625620	1.00[ASN][1000 genomes]
rs11625769	1.00[ASN][1000 genomes]
rs12147236	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12147614	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17836166	1.00[ASN][1000 genomes]
rs2009367	1.00[ASN][1000 genomes]
rs61519036	1.00[ASN][1000 genomes]
rs61993116	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61993137	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61993139	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61993140	1.00[ASN][1000 genomes]
rs61993141	1.00[ASN][1000 genomes]
rs61993159	1.00[ASN][1000 genomes]
rs61995163	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61995166	1.00[ASN][1000 genomes]
rs61995177	1.00[ASN][1000 genomes]
rs61995185	1.00[ASN][1000 genomes]
rs8005235	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79901800-79904800	Enhancers	Stomach Smooth Muscle	stomach
2	chr14:79902000-79903200	Enhancers	Rectal Smooth Muscle	rectum
3	chr14:79902200-79903400	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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