Variant report

Variant	rs8021458
Chromosome Location	chr14:25559971-25559972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10134566	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10140833	0.93[ASN][1000 genomes]
rs10147992	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs11846085	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11846310	0.94[ASN][1000 genomes]
rs11847320	0.93[ASN][1000 genomes]
rs11847556	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12433556	0.95[ASN][1000 genomes]
rs1952497	0.94[ASN][1000 genomes]
rs1952498	0.94[ASN][1000 genomes]
rs1952505	0.94[ASN][1000 genomes]
rs1952508	0.92[ASN][1000 genomes]
rs2332466	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2332484	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28445295	0.94[ASN][1000 genomes]
rs56396822	0.92[ASN][1000 genomes]
rs59800591	0.95[ASN][1000 genomes]
rs6574177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7154660	0.93[ASN][1000 genomes]
rs8007052	0.89[CEU][hapmap]
rs8019648	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs873102	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs928074	0.93[ASN][1000 genomes]
rs9743584	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs974845	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25547000-25561600	Weak transcription	Pancreas	Pancrea
2	chr14:25558200-25560400	Enhancers	Placenta Amnion	Placenta Amnion
3	chr14:25558200-25563600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr14:25558600-25560000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr14:25558600-25561800	Enhancers	HSMM	muscle
6	chr14:25558800-25560000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr14:25558800-25560000	Weak transcription	Fetal Intestine Small	intestine
8	chr14:25558800-25560600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:25559000-25560200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:25559400-25560800	Enhancers	Osteobl	bone
11	chr14:25559600-25560800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:25559600-25560800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr14:25559600-25561000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:25559600-25561000	Enhancers	HSMMtube	muscle
15	chr14:25559600-25561800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr14:25559600-25564200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr14:25559800-25560000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr14:25559800-25560400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:25559800-25560600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr14:25559800-25560600	Enhancers	NH-A	brain

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