Variant report

Variant	rs974845
Chromosome Location	chr14:25566203-25566204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10134566	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10140833	0.95[ASN][1000 genomes]
rs10147992	0.82[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap]
rs11159034	0.88[CHD][hapmap]
rs11846085	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11846310	0.94[ASN][1000 genomes]
rs11847320	0.92[ASN][1000 genomes]
rs11847556	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12433556	0.94[ASN][1000 genomes]
rs1952497	0.94[ASN][1000 genomes]
rs1952498	0.94[ASN][1000 genomes]
rs1952505	0.97[ASN][1000 genomes]
rs1952508	0.96[ASN][1000 genomes]
rs2004925	0.81[CHD][hapmap]
rs2332462	0.84[CHD][hapmap]
rs2332466	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2332484	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28445295	0.93[ASN][1000 genomes]
rs56396822	0.94[ASN][1000 genomes]
rs59800591	0.94[ASN][1000 genomes]
rs6574126	0.83[CHD][hapmap]
rs6574177	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7141943	0.81[CHD][hapmap]
rs7154660	0.94[ASN][1000 genomes]
rs8007052	0.82[CEU][hapmap]
rs8019648	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8021458	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs873102	0.86[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap]
rs912304	0.88[CHD][hapmap]
rs928074	0.95[ASN][1000 genomes]
rs9743584	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv901511	chr14:25505085-25588029	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3490801	chr14:25560793-25675699	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3490802	chr14:25560793-25675699	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs974845	PRMT5	cis	parietal	SCAN
rs974845	SLC22A17	cis	cerebellum	SCAN
rs974845	DHRS1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25565400-25567200	Weak transcription	Right Ventricle	heart
2	chr14:25565600-25566400	Weak transcription	Placenta Amnion	Placenta Amnion

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