Variant report

Variant	rs8023311
Chromosome Location	chr15:41911805-41911806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11070343	0.81[ASN][1000 genomes]
rs11629678	0.86[ASN][1000 genomes]
rs11639043	0.85[ASN][1000 genomes]
rs16952372	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17676742	0.86[ASN][1000 genomes]
rs17733613	0.83[ASN][1000 genomes]
rs28526689	0.83[ASN][1000 genomes]
rs4923905	0.87[ASN][1000 genomes]
rs4924564	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62003900	0.81[EUR][1000 genomes]
rs9672298	0.93[ASN][1000 genomes]
rs9672360	0.93[ASN][1000 genomes]
rs9672671	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052902	chr15:41869277-41951572	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8023311	MGA	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41909000-41913000	Weak transcription	Placenta	Placenta
2	chr15:41909600-41912800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:41910200-41912800	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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