Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41906960..41912135-chr15:41912673..41916927,5	K562	blood:

Variant related genes	Relation type
ENSG00000174197	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1107858	0.85[CHB][hapmap]
rs11629678	0.83[ASN][1000 genomes]
rs11634956	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11639043	0.91[ASN][1000 genomes]
rs12440747	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs16952372	0.90[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16971976	0.92[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap]
rs17676742	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs17677199	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17677991	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17678138	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17678310	0.82[ASW][hapmap]
rs17678552	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17734856	0.86[CHB][hapmap]
rs4923905	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs4924570	0.93[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap]
rs8023311	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8035855	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs9672298	0.93[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs9672360	0.93[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs9672671	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052902	chr15:41869277-41951572	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4924564	ZSCAN29	cis	cerebellum	SCAN
rs4924564	JMJD7-PLA2G4B	cis	cerebellum	SCAN
rs4924564	JMJD7-PLA2G4B	cis	parietal	SCAN
rs4924564	C15orf41	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41909000-41913000	Weak transcription	Placenta	Placenta
2	chr15:41909600-41912800	Weak transcription	Placenta Amnion	Placenta Amnion

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