Variant report

Variant	rs8023761
Chromosome Location	chr15:83647740-83647741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83644712..83647395-chr15:83647491..83649168,2	MCF-7	breast:
2	chr15:83639890..83641913-chr15:83646413..83649279,2	MCF-7	breast:
3	chr15:83639358..83641036-chr15:83644967..83649288,3	K562	blood:
4	chr15:83638292..83642074-chr15:83644937..83647972,4	K562	blood:
5	chr15:83625962..83628685-chr15:83647104..83648830,2	MCF-7	breast:
6	chr15:83516468..83518353-chr15:83646598..83648267,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11857990	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6603042	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83622200-83649400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:83635600-83653800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:83635800-83654000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr15:83640200-83654000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:83640600-83654000	Weak transcription	HSMMtube	muscle
6	chr15:83640800-83654000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:83641200-83653800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr15:83641200-83654200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr15:83642000-83653800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr15:83642200-83653800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:83642200-83653800	Weak transcription	HSMM	muscle
12	chr15:83642200-83654000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr15:83642400-83653800	Weak transcription	Liver	Liver
14	chr15:83644400-83654000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr15:83644600-83654000	Weak transcription	Primary B cells from cord blood	blood
16	chr15:83644800-83649800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:83644800-83653800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:83644800-83654000	Weak transcription	A549	lung
19	chr15:83645400-83654000	Weak transcription	Brain Anterior Caudate	brain
20	chr15:83645800-83654200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr15:83646400-83654000	Weak transcription	K562	blood
22	chr15:83647000-83653800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr15:83647400-83653800	Weak transcription	Primary T cells from cord blood	blood
24	chr15:83647600-83654000	Weak transcription	Lung	lung

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