Variant report

Variant	rs8025619
Chromosome Location	chr15:52064376-52064377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52062590..52065272-chr15:52121050..52123108,2	MCF-7	breast:
2	chr15:52063986..52066845-chr15:52067763..52069392,2	MCF-7	breast:
3	chr15:52058591..52061806-chr15:52062033..52065705,3	K562	blood:

Variant related genes	Relation type
ENSG00000138594	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1035738	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17610835	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409029	1.00[ASN][1000 genomes]
rs8026066	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv3411789	chr15:52052789-52087519	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8025619	TEAD2	trans	lymphoblastoid	seeQTL

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52051200-52077600	Weak transcription	Psoas Muscle	Psoas
2	chr15:52051400-52068400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:52051400-52068400	Weak transcription	Stomach Mucosa	stomach
4	chr15:52052200-52068200	Weak transcription	Fetal Intestine Small	intestine
5	chr15:52052200-52068600	Weak transcription	HMEC	breast
6	chr15:52052200-52074600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:52052200-52076000	Weak transcription	Fetal Brain Male	brain
8	chr15:52052200-52101800	Weak transcription	Colonic Mucosa	Colon
9	chr15:52052400-52067000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:52052400-52068200	Weak transcription	Fetal Intestine Large	intestine
11	chr15:52052400-52073200	Weak transcription	NHDF-Ad	bronchial
12	chr15:52052400-52078400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr15:52052600-52065200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:52052600-52106600	Weak transcription	HSMM	muscle
15	chr15:52053400-52090600	Weak transcription	Pancreas	Pancrea
16	chr15:52058400-52067600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:52058600-52068200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr15:52058800-52072800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr15:52060200-52068200	Weak transcription	Liver	Liver
20	chr15:52060200-52103400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr15:52060400-52064600	Strong transcription	Fetal Muscle Leg	muscle
22	chr15:52060400-52068400	Strong transcription	Thymus	Thymus
23	chr15:52060400-52069200	Weak transcription	Placenta	Placenta
24	chr15:52060400-52069800	Strong transcription	Stomach Smooth Muscle	stomach
25	chr15:52060400-52079200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr15:52060400-52085400	Weak transcription	Fetal Lung	lung
27	chr15:52060600-52065200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr15:52060600-52065400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr15:52060600-52065800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr15:52060600-52068600	Weak transcription	Brain Substantia Nigra	brain
31	chr15:52060600-52069000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:52060600-52073400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr15:52060600-52073600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr15:52060600-52087400	Weak transcription	Gastric	stomach
35	chr15:52060600-52088400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr15:52060600-52091000	Weak transcription	Right Ventricle	heart
37	chr15:52060800-52064600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr15:52060800-52067600	Strong transcription	Colon Smooth Muscle	Colon
39	chr15:52060800-52067800	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr15:52060800-52068400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:52060800-52068600	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr15:52060800-52074600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr15:52060800-52101200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr15:52060800-52102600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr15:52060800-52105400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr15:52061000-52068400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr15:52061000-52069800	Strong transcription	Primary T cells from cord blood	blood
48	chr15:52061000-52074400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr15:52061600-52065200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr15:52061600-52073600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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