Variant report

Variant	rs8026066
Chromosome Location	chr15:52050037-52050038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52047517..52051526-chr15:52055116..52057120,3	K562	blood:
2	chr15:52043733..52046292-chr15:52047210..52050045,3	MCF-7	breast:
3	chr15:52043149..52046754-chr15:52046824..52050469,4	K562	blood:
4	chr15:52049744..52051270-chr15:52058518..52061301,2	K562	blood:
5	chr15:52028579..52031295-chr15:52046217..52050933,5	MCF-7	breast:
6	chr15:52049654..52051374-chr15:52054509..52056705,2	MCF-7	breast:
7	chr15:52042908..52046919-chr15:52047131..52052382,6	MCF-7	breast:
8	chr15:52048901..52051193-chr15:52052461..52055031,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000140280	Chromatin interaction
ENSG00000128872	Chromatin interaction
ENSG00000259377	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1035738	1.00[CEU][hapmap]
rs17610835	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8025619	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52044400-52050800	Weak transcription	Gastric	stomach
2	chr15:52044600-52060000	Weak transcription	Esophagus	oesophagus
3	chr15:52044600-52060200	Weak transcription	Aorta	Aorta
4	chr15:52044800-52050600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:52044800-52051000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:52044800-52051000	Weak transcription	Right Ventricle	heart
7	chr15:52044800-52060000	Weak transcription	Spleen	Spleen
8	chr15:52045000-52050600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr15:52045000-52050800	Weak transcription	HMEC	breast
10	chr15:52045000-52060200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:52045200-52050600	Weak transcription	Brain Germinal Matrix	brain
12	chr15:52045200-52053400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr15:52045400-52050400	Weak transcription	Fetal Brain Female	brain
14	chr15:52045400-52050600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr15:52045400-52050600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr15:52045400-52051000	Weak transcription	Left Ventricle	heart
17	chr15:52045600-52050600	Weak transcription	Colon Smooth Muscle	Colon
18	chr15:52045800-52053200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:52046000-52050400	Weak transcription	Fetal Brain Male	brain
20	chr15:52046800-52060000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr15:52047000-52052400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr15:52047200-52053600	Enhancers	Brain Cingulate Gyrus	brain
23	chr15:52047400-52050800	Enhancers	Brain Anterior Caudate	brain
24	chr15:52047400-52050800	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr15:52047400-52050800	Enhancers	Brain Substantia Nigra	brain
26	chr15:52047400-52053600	Enhancers	Brain Hippocampus Middle	brain
27	chr15:52048000-52050800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr15:52048000-52050800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr15:52048000-52058000	Weak transcription	Primary T cells from cord blood	blood
30	chr15:52048200-52050600	Weak transcription	Fetal Intestine Small	intestine
31	chr15:52048200-52060000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr15:52048200-52060200	Weak transcription	Thymus	Thymus
33	chr15:52048400-52050800	Weak transcription	Lung	lung
34	chr15:52048600-52052200	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr15:52048800-52050600	Weak transcription	Adipose Nuclei	Adipose
36	chr15:52048800-52050800	Weak transcription	Right Atrium	heart
37	chr15:52049000-52050600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr15:52049000-52050800	Weak transcription	K562	blood
39	chr15:52049000-52053000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr15:52049200-52053000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:52049200-52053400	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr15:52049200-52060000	Weak transcription	Dnd41	blood
43	chr15:52049400-52052600	Enhancers	Brain Angular Gyrus	brain
44	chr15:52049400-52059800	Weak transcription	Primary B cells from cord blood	blood
45	chr15:52049800-52050200	Enhancers	Fetal Muscle Leg	muscle
46	chr15:52049800-52051000	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr15:52049800-52052400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr15:52049800-52052400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr15:52049800-52052400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr15:52049800-52053400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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