Variant report

Variant	rs802743
Chromosome Location	chr6:128272876-128272877
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1089652	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1089653	0.93[ASN][1000 genomes]
rs12194403	0.80[EUR][1000 genomes]
rs1418601	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs802721	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs802722	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802724	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs802725	0.93[ASN][1000 genomes]
rs802726	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs802727	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs802728	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs802730	0.97[ASN][1000 genomes]
rs802731	0.97[ASN][1000 genomes]
rs802732	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs802733	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs802734	0.97[ASN][1000 genomes]
rs802735	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs802737	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs802738	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs802739	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs802740	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs802744	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs802746	0.97[ASN][1000 genomes]
rs802747	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs802750	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs802751	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128270600-128293400	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:128271000-128273000	Enhancers	Primary hematopoietic stem cells	blood
3	chr6:128271000-128273000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:128271000-128273400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:128271200-128274400	Enhancers	Dnd41	blood
6	chr6:128271400-128273000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr6:128271400-128274000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:128271400-128274400	Enhancers	Thymus	Thymus
9	chr6:128271400-128275400	Enhancers	Fetal Thymus	thymus
10	chr6:128271600-128273000	Enhancers	Primary B cells from peripheral blood	blood
11	chr6:128271600-128273200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr6:128271800-128273200	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr6:128272000-128273400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr6:128272200-128273000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr6:128272200-128273000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr6:128272200-128273200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
17	chr6:128272400-128273200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:128272400-128292600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:128272600-128273000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:128272600-128273400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
21	chr6:128272600-128273400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr6:128272800-128273200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:128272800-128273200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:128272800-128273400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:128272800-128274200	Enhancers	Placenta	Placenta

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