Variant report

Variant	rs802751
Chromosome Location	chr6:128264925-128264926
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1089652	0.92[ASN][1000 genomes]
rs1089653	0.92[ASN][1000 genomes]
rs3190930	0.91[YRI][hapmap]
rs3933376	0.91[YRI][hapmap];0.94[AMR][1000 genomes]
rs4559105	0.90[YRI][hapmap]
rs802721	0.89[ASN][1000 genomes]
rs802722	0.90[ASN][1000 genomes]
rs802724	0.93[ASN][1000 genomes]
rs802725	0.92[ASN][1000 genomes]
rs802726	0.88[ASN][1000 genomes]
rs802727	0.94[ASN][1000 genomes]
rs802728	0.94[ASN][1000 genomes]
rs802730	0.96[ASN][1000 genomes]
rs802731	0.96[ASN][1000 genomes]
rs802732	0.96[ASN][1000 genomes]
rs802733	0.96[ASN][1000 genomes]
rs802734	0.96[ASN][1000 genomes]
rs802735	0.96[ASN][1000 genomes]
rs802737	0.86[ASN][1000 genomes]
rs802738	0.90[ASN][1000 genomes]
rs802739	0.96[ASN][1000 genomes]
rs802740	0.96[ASN][1000 genomes]
rs802743	0.93[ASN][1000 genomes]
rs802744	0.96[ASN][1000 genomes]
rs802746	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs802747	0.94[ASN][1000 genomes]
rs802750	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128254200-128271400	Weak transcription	Thymus	Thymus
2	chr6:128261400-128271200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:128264800-128266600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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