Variant report

Variant	rs8028863
Chromosome Location	chr15:43012764-43012765
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:43011244..43015007-chr15:43016381..43019349,5	K562	blood:
2	chr15:43007397..43009798-chr15:43011681..43013458,2	MCF-7	breast:
3	chr15:43010693..43013698-chr15:43016416..43019349,5	K562	blood:
4	chr15:43010972..43017152-chr15:43019499..43025146,7	MCF-7	breast:
5	chr15:43011390..43013542-chr15:43022490..43025034,3	K562	blood:

Variant related genes	Relation type
ENSG00000140326	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57258642	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs61747153	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv457122	chr15:42948862-43062548	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv569238	chr15:42948862-43062548	Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv517553	chr15:42970899-43023482	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42908800-43015000	Weak transcription	Fetal Kidney	kidney
2	chr15:42976600-43015200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:42977000-43016600	Weak transcription	Hela-S3	cervix
4	chr15:42981400-43015000	Weak transcription	HSMM	muscle
5	chr15:42984000-43014800	Weak transcription	K562	blood
6	chr15:42986000-43018400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:42987800-43016400	Weak transcription	Esophagus	oesophagus
8	chr15:42993400-43015400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:42997200-43016400	Weak transcription	Pancreas	Pancrea
10	chr15:43000800-43018600	Weak transcription	A549	lung
11	chr15:43001000-43014800	Weak transcription	HUVEC	blood vessel
12	chr15:43004200-43016200	Weak transcription	Psoas Muscle	Psoas
13	chr15:43007200-43026800	Strong transcription	Fetal Stomach	stomach
14	chr15:43007800-43020800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:43008000-43014000	Strong transcription	Fetal Muscle Leg	muscle
16	chr15:43008000-43027600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr15:43008200-43013000	Strong transcription	Primary hematopoietic stem cells	blood
18	chr15:43008200-43027600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:43008200-43027800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:43008400-43020000	Strong transcription	Fetal Muscle Trunk	muscle
21	chr15:43008400-43020400	Strong transcription	Brain Substantia Nigra	brain
22	chr15:43008600-43012800	Strong transcription	Brain Cingulate Gyrus	brain
23	chr15:43008600-43027400	Strong transcription	Fetal Brain Female	brain
24	chr15:43008800-43014000	Strong transcription	Rectal Smooth Muscle	rectum
25	chr15:43008800-43014200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:43008800-43017200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr15:43008800-43018400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr15:43008800-43019800	Strong transcription	Brain Inferior Temporal Lobe	brain
29	chr15:43008800-43026600	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr15:43008800-43027200	Strong transcription	Brain Germinal Matrix	brain
31	chr15:43008800-43027200	Strong transcription	Lung	lung
32	chr15:43008800-43027400	Strong transcription	Adipose Nuclei	Adipose
33	chr15:43008800-43027800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:43009000-43012800	Strong transcription	Brain Hippocampus Middle	brain
35	chr15:43009000-43012800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr15:43009000-43013400	Strong transcription	Right Ventricle	heart
37	chr15:43009000-43027400	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr15:43009000-43027600	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr15:43009000-43027800	Strong transcription	Fetal Intestine Large	intestine
40	chr15:43009200-43013000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr15:43009200-43014800	Weak transcription	Osteobl	bone
42	chr15:43009200-43027800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:43009400-43015200	Weak transcription	NHDF-Ad	bronchial
44	chr15:43009400-43015600	Weak transcription	Small Intestine	intestine
45	chr15:43009400-43017400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:43009400-43018200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr15:43009600-43026600	Strong transcription	Spleen	Spleen
48	chr15:43009600-43027400	Strong transcription	Fetal Intestine Small	intestine
49	chr15:43009600-43027800	Strong transcription	Left Ventricle	heart
50	chr15:43009800-43013000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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