Variant report

Variant	rs8028953
Chromosome Location	chr15:58042682-58042683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1540397	1.00[EUR][1000 genomes]
rs16977673	1.00[EUR][1000 genomes]
rs1834487	1.00[EUR][1000 genomes]
rs1946357	1.00[EUR][1000 genomes]
rs2098891	1.00[EUR][1000 genomes]
rs2554031	1.00[EUR][1000 genomes]
rs2733610	1.00[EUR][1000 genomes]
rs2733611	1.00[EUR][1000 genomes]
rs2733612	1.00[EUR][1000 genomes]
rs28540249	1.00[EUR][1000 genomes]
rs28547400	1.00[EUR][1000 genomes]
rs28630067	1.00[EUR][1000 genomes]
rs28707698	1.00[EUR][1000 genomes]
rs55769610	1.00[EUR][1000 genomes]
rs59333719	1.00[EUR][1000 genomes]
rs60234362	1.00[EUR][1000 genomes]
rs6493944	1.00[EUR][1000 genomes]
rs6493948	1.00[EUR][1000 genomes]
rs7174233	1.00[EUR][1000 genomes]
rs7181645	1.00[EUR][1000 genomes]
rs74017953	1.00[EUR][1000 genomes]
rs933839	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58025400-58045200	Weak transcription	Right Atrium	heart
2	chr15:58038400-58061400	Weak transcription	Aorta	Aorta
3	chr15:58039600-58044600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:58039800-58043000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:58039800-58043200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:58039800-58044200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:58039800-58044600	Weak transcription	Fetal Muscle Leg	muscle
8	chr15:58040000-58044600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:58040000-58044800	Weak transcription	Fetal Lung	lung
10	chr15:58040000-58045200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:58040200-58042800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr15:58040200-58043200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr15:58040200-58044400	Weak transcription	Fetal Kidney	kidney
14	chr15:58040400-58042800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:58040400-58043000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:58040400-58043000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr15:58040400-58043400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr15:58040600-58043200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr15:58041000-58045200	Enhancers	Thymus	Thymus
20	chr15:58041400-58047800	Enhancers	Fetal Thymus	thymus
21	chr15:58042600-58042800	Enhancers	NHDF-Ad	bronchial
22	chr15:58042600-58045200	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links