Variant report

Variant	rs60234362
Chromosome Location	chr15:57950698-57950699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1540397	1.00[EUR][1000 genomes]
rs1540398	0.92[AMR][1000 genomes]
rs16953334	1.00[EUR][1000 genomes]
rs16977553	1.00[EUR][1000 genomes]
rs16977555	1.00[EUR][1000 genomes]
rs16977563	1.00[EUR][1000 genomes]
rs16977581	1.00[EUR][1000 genomes]
rs16977583	1.00[EUR][1000 genomes]
rs16977584	1.00[EUR][1000 genomes]
rs16977600	1.00[EUR][1000 genomes]
rs16977673	1.00[EUR][1000 genomes]
rs1834487	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1946357	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2098891	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2554031	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2733610	1.00[EUR][1000 genomes]
rs2733611	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2733612	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28540249	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28547400	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28630067	1.00[EUR][1000 genomes]
rs28707698	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55769610	1.00[EUR][1000 genomes]
rs55782827	1.00[EUR][1000 genomes]
rs56091272	1.00[EUR][1000 genomes]
rs59333719	1.00[EUR][1000 genomes]
rs60767381	1.00[EUR][1000 genomes]
rs60973024	1.00[EUR][1000 genomes]
rs6493944	1.00[EUR][1000 genomes]
rs6493948	1.00[EUR][1000 genomes]
rs7167118	1.00[EUR][1000 genomes]
rs7174233	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174359	1.00[EUR][1000 genomes]
rs7181645	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421901	1.00[EUR][1000 genomes]
rs73423507	1.00[EUR][1000 genomes]
rs73423512	1.00[EUR][1000 genomes]
rs73423518	1.00[EUR][1000 genomes]
rs73423522	1.00[EUR][1000 genomes]
rs73423541	1.00[EUR][1000 genomes]
rs73423555	1.00[EUR][1000 genomes]
rs73423558	1.00[EUR][1000 genomes]
rs73423560	1.00[EUR][1000 genomes]
rs73423562	1.00[EUR][1000 genomes]
rs73423566	1.00[EUR][1000 genomes]
rs73423591	1.00[EUR][1000 genomes]
rs74016236	1.00[EUR][1000 genomes]
rs74017953	1.00[EUR][1000 genomes]
rs74018224	1.00[EUR][1000 genomes]
rs8028953	1.00[EUR][1000 genomes]
rs933839	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv524912	chr15:57950634-57953564	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57919400-57959400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:57932200-57967400	Weak transcription	Aorta	Aorta
3	chr15:57933400-57982600	Weak transcription	Esophagus	oesophagus
4	chr15:57936600-57954000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:57940200-57955000	Weak transcription	Gastric	stomach
6	chr15:57940800-57955000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr15:57941600-57954600	Weak transcription	Pancreas	Pancrea
8	chr15:57941600-57955000	Weak transcription	Psoas Muscle	Psoas
9	chr15:57947000-57952800	Weak transcription	Small Intestine	intestine
10	chr15:57947000-57954000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr15:57947400-57953800	Weak transcription	Stomach Mucosa	stomach
12	chr15:57947400-57959200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:57947800-57954400	Weak transcription	Fetal Muscle Leg	muscle
14	chr15:57948400-57953200	Weak transcription	Left Ventricle	heart
15	chr15:57948400-57953800	Weak transcription	Fetal Intestine Large	intestine
16	chr15:57948400-57953800	Weak transcription	Fetal Intestine Small	intestine
17	chr15:57948600-57954800	Strong transcription	Adipose Nuclei	Adipose
18	chr15:57949200-57967400	Weak transcription	Right Ventricle	heart
19	chr15:57949400-57953200	Weak transcription	Fetal Kidney	kidney
20	chr15:57950200-57953200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr15:57950400-57951000	Enhancers	Fetal Heart	heart

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