Variant report

Variant	rs7167118
Chromosome Location	chr15:57808601-57808602
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10851616	0.82[AFR][1000 genomes]
rs11630712	0.81[AFR][1000 genomes]
rs11630740	0.81[AFR][1000 genomes]
rs11634739	0.81[AFR][1000 genomes]
rs12439099	0.81[AFR][1000 genomes]
rs12439126	0.81[AFR][1000 genomes]
rs1290244	1.00[EUR][1000 genomes]
rs16953334	1.00[EUR][1000 genomes]
rs16977546	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16977553	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16977555	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16977563	1.00[EUR][1000 genomes]
rs16977581	1.00[EUR][1000 genomes]
rs16977583	1.00[EUR][1000 genomes]
rs16977584	1.00[EUR][1000 genomes]
rs16977600	1.00[EUR][1000 genomes]
rs1834487	1.00[EUR][1000 genomes]
rs2172613	0.82[AFR][1000 genomes]
rs28540249	1.00[EUR][1000 genomes]
rs28547400	1.00[EUR][1000 genomes]
rs28707698	1.00[EUR][1000 genomes]
rs55782827	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56091272	1.00[EUR][1000 genomes]
rs56179101	1.00[EUR][1000 genomes]
rs56810932	1.00[EUR][1000 genomes]
rs58764014	1.00[EUR][1000 genomes]
rs60234362	1.00[EUR][1000 genomes]
rs60767381	1.00[EUR][1000 genomes]
rs60973024	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7174185	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7174359	1.00[EUR][1000 genomes]
rs73421833	1.00[EUR][1000 genomes]
rs73421838	1.00[EUR][1000 genomes]
rs73421863	1.00[EUR][1000 genomes]
rs73421865	1.00[EUR][1000 genomes]
rs73421901	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73423506	1.00[AFR][1000 genomes]
rs73423507	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73423512	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73423518	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73423522	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73423541	1.00[EUR][1000 genomes]
rs73423555	1.00[EUR][1000 genomes]
rs73423558	1.00[EUR][1000 genomes]
rs73423560	1.00[EUR][1000 genomes]
rs73423562	1.00[EUR][1000 genomes]
rs73423566	1.00[EUR][1000 genomes]
rs73423591	1.00[EUR][1000 genomes]
rs74016229	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016236	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74018224	1.00[EUR][1000 genomes]
rs7496403	0.81[AFR][1000 genomes]
rs933839	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv833022	chr15:57657412-57830112	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57794200-57808800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:57797000-57814000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr15:57797000-57827200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:57798400-57809400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:57799000-57809000	Weak transcription	HepG2	liver
6	chr15:57801600-57808800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:57801800-57808800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:57801800-57808800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:57801800-57809000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:57801800-57819000	Weak transcription	Esophagus	oesophagus
11	chr15:57802000-57808800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:57802000-57810600	Weak transcription	Fetal Brain Female	brain
13	chr15:57802000-57819600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:57802600-57808800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr15:57802600-57846600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:57802800-57809000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr15:57802800-57822600	Weak transcription	Brain Hippocampus Middle	brain
18	chr15:57803000-57809200	Weak transcription	Fetal Kidney	kidney
19	chr15:57803000-57818800	Weak transcription	Fetal Intestine Large	intestine
20	chr15:57803200-57808800	Weak transcription	Fetal Intestine Small	intestine
21	chr15:57803200-57808800	Weak transcription	Lung	lung
22	chr15:57803200-57809200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr15:57803200-57819400	Weak transcription	Ovary	ovary
24	chr15:57803200-57842800	Weak transcription	Aorta	Aorta
25	chr15:57804000-57810800	Weak transcription	HUVEC	blood vessel
26	chr15:57805000-57808800	Weak transcription	Gastric	stomach
27	chr15:57805400-57808800	Weak transcription	Pancreas	Pancrea
28	chr15:57805400-57814200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr15:57807000-57816200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr15:57807000-57818400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:57807400-57814200	Strong transcription	Liver	Liver
32	chr15:57808400-57808800	Enhancers	Fetal Heart	heart
33	chr15:57808400-57809000	Enhancers	Stomach Mucosa	stomach
34	chr15:57808400-57810000	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr15:57808400-57817200	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr15:57808600-57809400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:57808600-57809400	Enhancers	Brain Anterior Caudate	brain
38	chr15:57808600-57809400	Enhancers	Fetal Brain Male	brain
39	chr15:57808600-57809400	Enhancers	Fetal Muscle Leg	muscle
40	chr15:57808600-57809600	Enhancers	Fetal Muscle Trunk	muscle
41	chr15:57808600-57809600	Genic enhancers	Fetal Stomach	stomach
42	chr15:57808600-57810000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr15:57808600-57810000	Enhancers	Fetal Lung	lung
44	chr15:57808600-57810400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
45	chr15:57808600-57811000	Enhancers	Placenta	Placenta
46	chr15:57808600-57817200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:57808600-57817800	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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