Variant report

Variant	rs7174185
Chromosome Location	chr15:57788440-57788441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57777677..57780127-chr15:57786834..57789579,2	K562	blood:
2	chr15:57785599..57788871-chr15:57789912..57793304,3	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1280395	1.00[AMR][1000 genomes]
rs1280406	1.00[AMR][1000 genomes]
rs1290244	1.00[EUR][1000 genomes]
rs16953334	1.00[EUR][1000 genomes]
rs16977546	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16977553	1.00[EUR][1000 genomes]
rs16977555	1.00[EUR][1000 genomes]
rs16977563	1.00[EUR][1000 genomes]
rs16977581	1.00[EUR][1000 genomes]
rs16977583	1.00[EUR][1000 genomes]
rs16977584	1.00[EUR][1000 genomes]
rs16977600	1.00[EUR][1000 genomes]
rs1706353	1.00[AMR][1000 genomes]
rs2442076	1.00[AMR][1000 genomes]
rs55782827	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56091272	1.00[EUR][1000 genomes]
rs56179101	1.00[EUR][1000 genomes]
rs56810932	1.00[EUR][1000 genomes]
rs58764014	1.00[EUR][1000 genomes]
rs59189354	1.00[AMR][1000 genomes]
rs60767381	1.00[EUR][1000 genomes]
rs60973024	1.00[EUR][1000 genomes]
rs7167118	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7174359	1.00[EUR][1000 genomes]
rs73421814	1.00[AMR][1000 genomes]
rs73421833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73421838	1.00[EUR][1000 genomes]
rs73421863	1.00[EUR][1000 genomes]
rs73421865	1.00[EUR][1000 genomes]
rs73421901	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73423506	0.81[AFR][1000 genomes]
rs73423507	1.00[EUR][1000 genomes]
rs73423512	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73423518	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73423522	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73423541	1.00[EUR][1000 genomes]
rs73423555	1.00[EUR][1000 genomes]
rs73423558	1.00[EUR][1000 genomes]
rs73423560	1.00[EUR][1000 genomes]
rs73423562	1.00[EUR][1000 genomes]
rs73423566	1.00[EUR][1000 genomes]
rs73423591	1.00[EUR][1000 genomes]
rs74016229	1.00[EUR][1000 genomes]
rs74016236	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74018224	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv457170	chr15:57644456-57790436	Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv569588	chr15:57644456-57790436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv833022	chr15:57657412-57830112	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1045620	chr15:57680733-57804237	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2763103	chr15:57781577-57799765	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57771000-57795200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:57778200-57798400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr15:57778600-57789000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:57779000-57788600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr15:57779000-57789000	Weak transcription	Esophagus	oesophagus
6	chr15:57779000-57794200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:57779000-57794400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr15:57779000-57797600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:57779000-57798200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:57779200-57788600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:57779400-57794200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:57779400-57800800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:57786600-57790000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr15:57786800-57789000	Enhancers	HepG2	liver
15	chr15:57786800-57790000	Enhancers	Right Ventricle	heart
16	chr15:57787000-57789200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:57787000-57790200	Enhancers	Fetal Intestine Large	intestine
18	chr15:57787000-57790400	Enhancers	Fetal Lung	lung
19	chr15:57787000-57791000	Enhancers	Pancreas	Pancrea
20	chr15:57787200-57790600	Enhancers	Stomach Mucosa	stomach
21	chr15:57787200-57802000	Weak transcription	Aorta	Aorta
22	chr15:57787400-57788600	Enhancers	Fetal Kidney	kidney
23	chr15:57787400-57790000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr15:57787400-57790600	Enhancers	Fetal Intestine Small	intestine
25	chr15:57787400-57791000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:57787600-57788800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr15:57787600-57789000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr15:57787600-57790000	Enhancers	Liver	Liver
29	chr15:57787600-57793000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:57787800-57788800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr15:57787800-57789200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:57787800-57791400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr15:57787800-57793200	Weak transcription	NHDF-Ad	bronchial
34	chr15:57788000-57788800	Weak transcription	Fetal Stomach	stomach
35	chr15:57788000-57790000	Enhancers	Duodenum Mucosa	Duodenum
36	chr15:57788200-57790400	Enhancers	Left Ventricle	heart
37	chr15:57788200-57790400	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr15:57788200-57790600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:57788200-57793400	Weak transcription	HUVEC	blood vessel
40	chr15:57788200-57797600	Enhancers	Fetal Heart	heart
41	chr15:57788400-57788600	Enhancers	Fetal Muscle Leg	muscle
42	chr15:57788400-57790000	Enhancers	Right Atrium	heart
43	chr15:57788400-57790200	Enhancers	Placenta	Placenta
44	chr15:57788400-57790400	Enhancers	Gastric	stomach
45	chr15:57788400-57791400	Enhancers	Lung	lung
46	chr15:57788400-57793600	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links