Variant report

Variant rs16977600
Chromosome Location chr15:57852872-57852873
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:57837800-57853000 Weak transcription Colon Smooth Muscle Colon
2 chr15:57844600-57859000 Weak transcription H9 Cell Line embryonic stem cell
3 chr15:57844800-57857400 Weak transcription HUES48 Cell Line embryonic stem cell
4 chr15:57845200-57857600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr15:57846800-57861400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr15:57847000-57854600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
7 chr15:57847200-57853400 Weak transcription NHEK skin
8 chr15:57847200-57854400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr15:57847600-57853400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr15:57847600-57854400 Weak transcription Pancreas Pancrea
11 chr15:57847600-57859200 Weak transcription Right Ventricle heart
12 chr15:57847800-57853600 Weak transcription Fetal Stomach stomach
13 chr15:57847800-57859000 Weak transcription Gastric stomach
14 chr15:57847800-57859200 Weak transcription Ovary ovary
15 chr15:57847800-57859200 Weak transcription Right Atrium heart
16 chr15:57849600-57853200 Weak transcription Fetal Muscle Leg muscle
17 chr15:57850200-57854400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr15:57851800-57853600 Enhancers Liver Liver
19 chr15:57852000-57856400 Enhancers Stomach Mucosa stomach
20 chr15:57852200-57853200 Enhancers HepG2 liver
21 chr15:57852200-57853400 Enhancers Fetal Heart heart
22 chr15:57852200-57853400 Enhancers Hela-S3 cervix
23 chr15:57852200-57853400 Enhancers HUVEC blood vessel
24 chr15:57852200-57853800 Enhancers Skeletal Muscle Male skeletal muscle
25 chr15:57852200-57854000 Enhancers A549 lung
26 chr15:57852400-57853000 Enhancers Small Intestine intestine
27 chr15:57852400-57853600 Enhancers Breast Myoepithelial Primary Cells Breast
28 chr15:57852400-57853600 Enhancers Rectal Mucosa Donor 31 rectum
29 chr15:57852400-57853800 Enhancers Fetal Intestine Small intestine
30 chr15:57852400-57854000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr15:57852400-57854000 Enhancers Fetal Intestine Large intestine
32 chr15:57852400-57855400 Enhancers Stomach Smooth Muscle stomach
33 chr15:57852400-57855600 Weak transcription Primary T killer memory cells from peripheral blood blood
34 chr15:57852600-57853000 Weak transcription Primary B cells from peripheral blood blood
35 chr15:57852600-57853000 Enhancers Duodenum Smooth Muscle Duodenum
36 chr15:57852600-57853000 Flanking Active TSS Rectal Mucosa Donor 29 rectum
37 chr15:57852600-57853400 Weak transcription ES-WA7 Cell Line embryonic stem cell
38 chr15:57852600-57853600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr15:57852800-57853000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr15:57852800-57853200 Weak transcription Primary T helper naive cells fromperipheralblood blood
41 chr15:57852800-57853200 Weak transcription HMEC breast
42 chr15:57852800-57853600 Enhancers Duodenum Mucosa Duodenum

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