Variant report

Variant	rs73423566
Chromosome Location	chr15:57836626-57836627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1290244	1.00[EUR][1000 genomes]
rs1540397	1.00[EUR][1000 genomes]
rs16953334	1.00[EUR][1000 genomes]
rs16977546	1.00[EUR][1000 genomes]
rs16977553	1.00[EUR][1000 genomes]
rs16977555	1.00[EUR][1000 genomes]
rs16977563	1.00[EUR][1000 genomes]
rs16977581	1.00[EUR][1000 genomes]
rs16977583	1.00[EUR][1000 genomes]
rs16977584	1.00[EUR][1000 genomes]
rs16977600	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1834487	1.00[EUR][1000 genomes]
rs1946357	1.00[EUR][1000 genomes]
rs2098891	1.00[EUR][1000 genomes]
rs2554031	1.00[EUR][1000 genomes]
rs2733610	1.00[EUR][1000 genomes]
rs2733611	1.00[EUR][1000 genomes]
rs2733612	1.00[EUR][1000 genomes]
rs28540249	1.00[EUR][1000 genomes]
rs28547400	1.00[EUR][1000 genomes]
rs28707698	1.00[EUR][1000 genomes]
rs55782827	1.00[EUR][1000 genomes]
rs56091272	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56179101	1.00[EUR][1000 genomes]
rs56810932	1.00[EUR][1000 genomes]
rs58764014	1.00[EUR][1000 genomes]
rs60234362	1.00[EUR][1000 genomes]
rs60767381	1.00[EUR][1000 genomes]
rs60973024	1.00[EUR][1000 genomes]
rs6493944	1.00[EUR][1000 genomes]
rs7167118	1.00[EUR][1000 genomes]
rs7174185	1.00[EUR][1000 genomes]
rs7174233	1.00[EUR][1000 genomes]
rs7174359	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7181645	1.00[EUR][1000 genomes]
rs73421833	1.00[EUR][1000 genomes]
rs73421838	1.00[EUR][1000 genomes]
rs73421863	1.00[EUR][1000 genomes]
rs73421865	1.00[EUR][1000 genomes]
rs73421901	1.00[EUR][1000 genomes]
rs73423507	1.00[EUR][1000 genomes]
rs73423512	1.00[EUR][1000 genomes]
rs73423518	1.00[EUR][1000 genomes]
rs73423522	1.00[EUR][1000 genomes]
rs73423541	1.00[EUR][1000 genomes]
rs73423555	1.00[EUR][1000 genomes]
rs73423558	1.00[EUR][1000 genomes]
rs73423560	1.00[EUR][1000 genomes]
rs73423562	1.00[EUR][1000 genomes]
rs73423591	1.00[EUR][1000 genomes]
rs74016229	1.00[EUR][1000 genomes]
rs74016236	1.00[EUR][1000 genomes]
rs74018224	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs933839	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57802600-57846600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:57803200-57842800	Weak transcription	Aorta	Aorta
3	chr15:57819200-57841000	Weak transcription	Esophagus	oesophagus
4	chr15:57819800-57840000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:57821800-57842800	Strong transcription	Liver	Liver
6	chr15:57827600-57840600	Weak transcription	Fetal Lung	lung
7	chr15:57829400-57841200	Weak transcription	Left Ventricle	heart
8	chr15:57829400-57842600	Weak transcription	Brain Hippocampus Middle	brain
9	chr15:57829600-57842000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:57829600-57843200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:57830000-57840800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:57830000-57846400	Weak transcription	Brain Substantia Nigra	brain
13	chr15:57830200-57842200	Strong transcription	Fetal Stomach	stomach
14	chr15:57830400-57843400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:57830600-57842200	Weak transcription	Brain Anterior Caudate	brain
16	chr15:57830800-57842400	Weak transcription	HUVEC	blood vessel
17	chr15:57831000-57839800	Weak transcription	Fetal Intestine Large	intestine
18	chr15:57831000-57840800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:57831400-57843400	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr15:57831800-57839200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr15:57832400-57842600	Weak transcription	Fetal Kidney	kidney
22	chr15:57832400-57843200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr15:57833000-57839400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr15:57833000-57841000	Weak transcription	Spleen	Spleen
25	chr15:57833400-57841400	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr15:57833800-57837000	Weak transcription	Fetal Intestine Small	intestine
27	chr15:57834000-57843000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:57834400-57837200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr15:57834400-57837800	Weak transcription	HepG2	liver
30	chr15:57834800-57837000	Weak transcription	Fetal Muscle Leg	muscle
31	chr15:57834800-57837600	Weak transcription	Colon Smooth Muscle	Colon
32	chr15:57834800-57839000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:57834800-57840000	Strong transcription	Placenta	Placenta
34	chr15:57834800-57843600	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr15:57835000-57836800	Weak transcription	Fetal Heart	heart
36	chr15:57835000-57839800	Weak transcription	Stomach Mucosa	stomach
37	chr15:57835200-57841800	Strong transcription	Stomach Smooth Muscle	stomach
38	chr15:57835400-57843000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr15:57835800-57839800	Strong transcription	Gastric	stomach
40	chr15:57835800-57840000	Strong transcription	Ovary	ovary
41	chr15:57835800-57840200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr15:57835800-57840400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:57835800-57843200	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr15:57836000-57839800	Strong transcription	Lung	lung
45	chr15:57836000-57840000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr15:57836200-57839800	Strong transcription	Pancreas	Pancrea
47	chr15:57836200-57840600	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr15:57836200-57842000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr15:57836200-57843400	Strong transcription	H9 Cell Line	embryonic stem cell
50	chr15:57836400-57837200	Genic enhancers	Fetal Muscle Trunk	muscle

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