Variant report

Variant	rs55782827
Chromosome Location	chr15:57802372-57802373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57797927..57800913-chr15:57801647..57804497,4	K562	blood:
2	chr15:57797159..57800107-chr15:57801647..57804598,2	K562	blood:
3	chr15:57797923..57800458-chr15:57801909..57803943,2	MCF-7	breast:
4	chr15:57801026..57803220-chr15:57837290..57839682,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10851616	0.82[AFR][1000 genomes]
rs11630712	0.81[AFR][1000 genomes]
rs11630740	0.81[AFR][1000 genomes]
rs11634739	0.81[AFR][1000 genomes]
rs12439099	0.81[AFR][1000 genomes]
rs12439126	0.81[AFR][1000 genomes]
rs1290244	1.00[EUR][1000 genomes]
rs16953334	1.00[EUR][1000 genomes]
rs16977546	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16977553	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16977555	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16977563	1.00[EUR][1000 genomes]
rs16977581	1.00[EUR][1000 genomes]
rs16977583	1.00[EUR][1000 genomes]
rs16977584	1.00[EUR][1000 genomes]
rs16977600	1.00[EUR][1000 genomes]
rs2172613	0.82[AFR][1000 genomes]
rs28540249	1.00[EUR][1000 genomes]
rs28547400	1.00[EUR][1000 genomes]
rs28707698	1.00[EUR][1000 genomes]
rs56091272	1.00[EUR][1000 genomes]
rs56179101	1.00[EUR][1000 genomes]
rs56810932	1.00[EUR][1000 genomes]
rs58764014	1.00[EUR][1000 genomes]
rs60234362	1.00[EUR][1000 genomes]
rs60767381	1.00[EUR][1000 genomes]
rs60973024	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7167118	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7174185	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7174359	1.00[EUR][1000 genomes]
rs73421833	1.00[EUR][1000 genomes]
rs73421838	1.00[EUR][1000 genomes]
rs73421863	1.00[EUR][1000 genomes]
rs73421865	1.00[EUR][1000 genomes]
rs73421901	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73423506	1.00[AFR][1000 genomes]
rs73423507	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73423512	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73423518	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73423522	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73423541	1.00[EUR][1000 genomes]
rs73423555	1.00[EUR][1000 genomes]
rs73423558	1.00[EUR][1000 genomes]
rs73423560	1.00[EUR][1000 genomes]
rs73423562	1.00[EUR][1000 genomes]
rs73423566	1.00[EUR][1000 genomes]
rs73423591	1.00[EUR][1000 genomes]
rs74016229	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016236	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74018224	1.00[EUR][1000 genomes]
rs7496403	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv833022	chr15:57657412-57830112	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1045620	chr15:57680733-57804237	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57790000-57808600	Weak transcription	Fetal Brain Male	brain
2	chr15:57793400-57803200	Enhancers	Placenta	Placenta
3	chr15:57793600-57803200	Enhancers	Fetal Intestine Small	intestine
4	chr15:57794200-57808800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:57797000-57814000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:57797000-57827200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:57797200-57802400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:57797800-57802600	Weak transcription	Osteobl	bone
9	chr15:57798000-57802400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:57798000-57805200	Enhancers	Fetal Heart	heart
11	chr15:57798400-57809400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:57798600-57808600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:57799000-57802800	Weak transcription	Brain Anterior Caudate	brain
14	chr15:57799000-57809000	Weak transcription	HepG2	liver
15	chr15:57800000-57803400	Enhancers	Primary B cells from peripheral blood	blood
16	chr15:57800600-57802800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:57800600-57802800	Enhancers	Primary B cells from cord blood	blood
18	chr15:57800600-57803200	Enhancers	Pancreas	Pancrea
19	chr15:57800800-57803000	Enhancers	Fetal Kidney	kidney
20	chr15:57800800-57803200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:57800800-57803200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr15:57800800-57803200	Enhancers	Fetal Muscle Trunk	muscle
23	chr15:57800800-57803200	Enhancers	Fetal Muscle Leg	muscle
24	chr15:57801200-57802600	Enhancers	HSMM	muscle
25	chr15:57801200-57802800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr15:57801200-57803200	Enhancers	Fetal Stomach	stomach
27	chr15:57801200-57803200	Enhancers	Gastric	stomach
28	chr15:57801200-57803200	Enhancers	Stomach Smooth Muscle	stomach
29	chr15:57801200-57803600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:57801400-57802800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:57801400-57802800	Enhancers	NHEK	skin
32	chr15:57801400-57803200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:57801400-57803200	Enhancers	Ovary	ovary
34	chr15:57801400-57803200	Enhancers	HMEC	breast
35	chr15:57801400-57803600	Enhancers	Fetal Lung	lung
36	chr15:57801600-57802400	Flanking Active TSS	HSMMtube	muscle
37	chr15:57801600-57802800	Enhancers	NHLF	lung
38	chr15:57801600-57803000	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr15:57801600-57803200	Enhancers	Right Ventricle	heart
40	chr15:57801600-57803400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:57801600-57808800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr15:57801800-57802400	Weak transcription	Left Ventricle	heart
43	chr15:57801800-57802400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr15:57801800-57802600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:57801800-57802600	Enhancers	Liver	Liver
46	chr15:57801800-57803200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:57801800-57808400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr15:57801800-57808800	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr15:57801800-57808800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr15:57801800-57809000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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