Variant report

Variant	rs74018224
Chromosome Location	chr15:57846994-57846995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57841937..57843856-chr15:57845649..57847200,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CGNL1-3	chr15:57846153-57847878	NONHSAT044077

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1280393	1.00[AMR][1000 genomes]
rs1280394	1.00[AMR][1000 genomes]
rs1290244	1.00[EUR][1000 genomes]
rs1540397	1.00[EUR][1000 genomes]
rs16953334	1.00[EUR][1000 genomes]
rs16977546	1.00[EUR][1000 genomes]
rs16977553	1.00[EUR][1000 genomes]
rs16977555	1.00[EUR][1000 genomes]
rs16977563	1.00[EUR][1000 genomes]
rs16977581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977583	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977584	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977600	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17820461	0.81[AFR][1000 genomes]
rs1834487	1.00[EUR][1000 genomes]
rs1946357	1.00[EUR][1000 genomes]
rs2098891	1.00[EUR][1000 genomes]
rs2554031	1.00[EUR][1000 genomes]
rs2733610	1.00[EUR][1000 genomes]
rs2733611	1.00[EUR][1000 genomes]
rs2733612	1.00[EUR][1000 genomes]
rs28540249	1.00[EUR][1000 genomes]
rs28547400	1.00[EUR][1000 genomes]
rs28707698	1.00[EUR][1000 genomes]
rs55782827	1.00[EUR][1000 genomes]
rs56091272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56179101	1.00[EUR][1000 genomes]
rs56810932	1.00[EUR][1000 genomes]
rs58764014	1.00[EUR][1000 genomes]
rs60004948	0.85[AFR][1000 genomes]
rs60234362	1.00[EUR][1000 genomes]
rs60767381	1.00[EUR][1000 genomes]
rs60973024	1.00[EUR][1000 genomes]
rs6493944	1.00[EUR][1000 genomes]
rs67336499	0.81[AFR][1000 genomes]
rs7167118	1.00[EUR][1000 genomes]
rs7167546	0.85[AFR][1000 genomes]
rs7168720	1.00[AMR][1000 genomes]
rs7171354	0.83[AFR][1000 genomes]
rs7171360	0.81[AFR][1000 genomes]
rs7174185	1.00[EUR][1000 genomes]
rs7174233	1.00[EUR][1000 genomes]
rs7174359	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7181645	1.00[EUR][1000 genomes]
rs73421833	1.00[EUR][1000 genomes]
rs73421838	1.00[EUR][1000 genomes]
rs73421863	1.00[EUR][1000 genomes]
rs73421865	1.00[EUR][1000 genomes]
rs73421901	1.00[EUR][1000 genomes]
rs73423507	1.00[EUR][1000 genomes]
rs73423512	1.00[EUR][1000 genomes]
rs73423518	1.00[EUR][1000 genomes]
rs73423522	1.00[EUR][1000 genomes]
rs73423541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423562	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73423566	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73423591	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016229	1.00[EUR][1000 genomes]
rs74016236	1.00[EUR][1000 genomes]
rs933839	1.00[EUR][1000 genomes]
rs9806136	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57837800-57853000	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:57839800-57847800	Enhancers	Fetal Intestine Large	intestine
3	chr15:57840600-57847400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr15:57840800-57848000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:57840800-57849400	Enhancers	Fetal Muscle Leg	muscle
6	chr15:57841000-57847800	Enhancers	Right Atrium	heart
7	chr15:57841000-57848000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr15:57841000-57848600	Enhancers	HSMMtube	muscle
9	chr15:57841200-57847600	Enhancers	Left Ventricle	heart
10	chr15:57841800-57847200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:57842000-57847800	Enhancers	Fetal Intestine Small	intestine
12	chr15:57842800-57847600	Enhancers	HMEC	breast
13	chr15:57842800-57848600	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr15:57843000-57847400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:57843000-57847600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr15:57843000-57847600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:57843000-57847600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr15:57843000-57847800	Enhancers	Gastric	stomach
19	chr15:57843000-57848400	Enhancers	Placenta	Placenta
20	chr15:57843000-57848600	Enhancers	Fetal Lung	lung
21	chr15:57843200-57847600	Enhancers	Lung	lung
22	chr15:57843400-57847000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:57843400-57847200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:57843400-57847600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr15:57843400-57847600	Enhancers	Pancreas	Pancrea
26	chr15:57843400-57847800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:57843800-57847400	Weak transcription	Psoas Muscle	Psoas
28	chr15:57844200-57848800	Enhancers	Fetal Heart	heart
29	chr15:57844400-57847600	Genic enhancers	Liver	Liver
30	chr15:57844600-57847000	Enhancers	HUVEC	blood vessel
31	chr15:57844600-57847400	Weak transcription	Spleen	Spleen
32	chr15:57844600-57847600	Enhancers	Right Ventricle	heart
33	chr15:57844600-57847800	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr15:57844600-57852200	Weak transcription	HepG2	liver
35	chr15:57844600-57859000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr15:57844800-57848600	Enhancers	Hela-S3	cervix
37	chr15:57844800-57857400	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr15:57845200-57847800	Enhancers	Brain Anterior Caudate	brain
39	chr15:57845200-57847800	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr15:57845200-57852400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr15:57845200-57857600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr15:57845400-57848000	Enhancers	Brain Hippocampus Middle	brain
43	chr15:57845400-57848600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr15:57845800-57847000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr15:57845800-57847600	Enhancers	Brain Cingulate Gyrus	brain
46	chr15:57845800-57847800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:57845800-57847800	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr15:57845800-57847800	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr15:57846000-57847800	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr15:57846000-57847800	Enhancers	Fetal Brain Female	brain

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