Variant report

Variant	rs16953334
Chromosome Location	chr15:57822360-57822361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1290244	1.00[EUR][1000 genomes]
rs1540397	1.00[EUR][1000 genomes]
rs16977546	1.00[EUR][1000 genomes]
rs16977553	1.00[EUR][1000 genomes]
rs16977555	1.00[EUR][1000 genomes]
rs16977563	1.00[EUR][1000 genomes]
rs16977581	1.00[EUR][1000 genomes]
rs16977583	1.00[EUR][1000 genomes]
rs16977584	1.00[EUR][1000 genomes]
rs16977600	1.00[EUR][1000 genomes]
rs1834487	1.00[EUR][1000 genomes]
rs1946357	1.00[EUR][1000 genomes]
rs2098891	1.00[EUR][1000 genomes]
rs2554031	1.00[EUR][1000 genomes]
rs2733610	1.00[EUR][1000 genomes]
rs2733611	1.00[EUR][1000 genomes]
rs2733612	1.00[EUR][1000 genomes]
rs28540249	1.00[EUR][1000 genomes]
rs28547400	1.00[EUR][1000 genomes]
rs28707698	1.00[EUR][1000 genomes]
rs55782827	1.00[EUR][1000 genomes]
rs56091272	1.00[EUR][1000 genomes]
rs56179101	1.00[EUR][1000 genomes]
rs56810932	1.00[EUR][1000 genomes]
rs58764014	1.00[EUR][1000 genomes]
rs60234362	1.00[EUR][1000 genomes]
rs60767381	1.00[EUR][1000 genomes]
rs60973024	1.00[EUR][1000 genomes]
rs6493944	1.00[EUR][1000 genomes]
rs7167118	1.00[EUR][1000 genomes]
rs7174185	1.00[EUR][1000 genomes]
rs7174233	1.00[EUR][1000 genomes]
rs7174359	1.00[EUR][1000 genomes]
rs7181645	1.00[EUR][1000 genomes]
rs73421833	1.00[EUR][1000 genomes]
rs73421838	1.00[EUR][1000 genomes]
rs73421863	1.00[EUR][1000 genomes]
rs73421865	1.00[EUR][1000 genomes]
rs73421901	1.00[EUR][1000 genomes]
rs73423507	1.00[EUR][1000 genomes]
rs73423512	1.00[EUR][1000 genomes]
rs73423518	1.00[EUR][1000 genomes]
rs73423522	1.00[EUR][1000 genomes]
rs73423541	1.00[EUR][1000 genomes]
rs73423555	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73423558	1.00[EUR][1000 genomes]
rs73423560	1.00[EUR][1000 genomes]
rs73423562	1.00[EUR][1000 genomes]
rs73423566	1.00[EUR][1000 genomes]
rs73423591	1.00[EUR][1000 genomes]
rs74016229	1.00[EUR][1000 genomes]
rs74016236	1.00[EUR][1000 genomes]
rs74018224	1.00[EUR][1000 genomes]
rs933839	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv833022	chr15:57657412-57830112	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57797000-57827200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:57802600-57846600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:57802800-57822600	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:57803200-57842800	Weak transcription	Aorta	Aorta
5	chr15:57811000-57827800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:57817000-57826600	Weak transcription	Lung	lung
7	chr15:57817200-57827800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:57819200-57841000	Weak transcription	Esophagus	oesophagus
9	chr15:57819800-57823000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:57819800-57824800	Weak transcription	Fetal Kidney	kidney
11	chr15:57819800-57825200	Weak transcription	Left Ventricle	heart
12	chr15:57819800-57825200	Weak transcription	Right Atrium	heart
13	chr15:57819800-57826200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:57819800-57826400	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr15:57819800-57829200	Weak transcription	Ovary	ovary
16	chr15:57819800-57833000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:57819800-57840000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr15:57820000-57825800	Weak transcription	Fetal Muscle Leg	muscle
19	chr15:57820000-57826600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:57820000-57826800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr15:57820200-57822600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:57820200-57822800	Weak transcription	Brain Anterior Caudate	brain
23	chr15:57820200-57823000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:57820200-57823800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr15:57820200-57824600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:57820200-57825000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr15:57820200-57825400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr15:57820200-57825600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr15:57820200-57825800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr15:57820200-57829200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:57820200-57829400	Weak transcription	Brain Angular Gyrus	brain
32	chr15:57820400-57823400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr15:57820600-57825000	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr15:57820600-57834000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:57820800-57822400	Strong transcription	Gastric	stomach
36	chr15:57820800-57822600	Strong transcription	H9 Cell Line	embryonic stem cell
37	chr15:57820800-57822800	Strong transcription	HepG2	liver
38	chr15:57820800-57825000	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr15:57820800-57826200	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr15:57821000-57822600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr15:57821000-57822600	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr15:57821000-57823800	Enhancers	Fetal Lung	lung
43	chr15:57821200-57822400	Enhancers	Fetal Intestine Large	intestine
44	chr15:57821200-57822800	Enhancers	Fetal Intestine Small	intestine
45	chr15:57821200-57822800	Enhancers	HUVEC	blood vessel
46	chr15:57821400-57822800	Enhancers	Colon Smooth Muscle	Colon
47	chr15:57821600-57822400	Weak transcription	Brain Substantia Nigra	brain
48	chr15:57821600-57822400	Genic enhancers	Fetal Heart	heart
49	chr15:57821600-57824400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr15:57821600-57824800	Weak transcription	Placenta	Placenta

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