Variant report

Variant	rs73423506
Chromosome Location	chr15:57800883-57800884
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57797927..57800913-chr15:57801647..57804497,4	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10851616	0.82[AFR][1000 genomes]
rs11630712	0.81[AFR][1000 genomes]
rs11630740	0.81[AFR][1000 genomes]
rs11634739	0.81[AFR][1000 genomes]
rs12439099	0.81[AFR][1000 genomes]
rs12439126	0.81[AFR][1000 genomes]
rs16977546	0.91[AFR][1000 genomes]
rs16977553	0.93[AFR][1000 genomes]
rs16977555	0.91[AFR][1000 genomes]
rs2172613	0.82[AFR][1000 genomes]
rs55782827	1.00[AFR][1000 genomes]
rs60973024	0.82[AFR][1000 genomes]
rs7167118	1.00[AFR][1000 genomes]
rs7174185	0.81[AFR][1000 genomes]
rs73421901	0.98[AFR][1000 genomes]
rs73423507	0.91[AFR][1000 genomes]
rs73423512	1.00[AFR][1000 genomes]
rs73423518	1.00[AFR][1000 genomes]
rs73423522	1.00[AFR][1000 genomes]
rs74016229	0.82[AFR][1000 genomes]
rs74016236	1.00[AFR][1000 genomes]
rs7496403	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv833022	chr15:57657412-57830112	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1045620	chr15:57680733-57804237	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57787200-57802000	Weak transcription	Aorta	Aorta
2	chr15:57789800-57801600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:57790000-57808600	Weak transcription	Fetal Brain Male	brain
4	chr15:57790200-57801400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:57793400-57803200	Enhancers	Placenta	Placenta
6	chr15:57793600-57801000	Weak transcription	HSMMtube	muscle
7	chr15:57793600-57803200	Enhancers	Fetal Intestine Small	intestine
8	chr15:57793800-57802000	Enhancers	Fetal Intestine Large	intestine
9	chr15:57794200-57808800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:57795200-57801600	Weak transcription	Small Intestine	intestine
11	chr15:57795600-57801200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:57797000-57801600	Weak transcription	Right Ventricle	heart
13	chr15:57797000-57814000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr15:57797000-57827200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:57797200-57802000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr15:57797200-57802400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:57797400-57801200	Weak transcription	Gastric	stomach
18	chr15:57797800-57801200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr15:57797800-57802600	Weak transcription	Osteobl	bone
20	chr15:57798000-57801200	Weak transcription	Esophagus	oesophagus
21	chr15:57798000-57801800	Weak transcription	Brain Substantia Nigra	brain
22	chr15:57798000-57802000	Weak transcription	Brain Hippocampus Middle	brain
23	chr15:57798000-57802400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr15:57798000-57805200	Enhancers	Fetal Heart	heart
25	chr15:57798400-57801000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr15:57798400-57809400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr15:57798600-57801000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:57798600-57801400	Weak transcription	HMEC	breast
29	chr15:57798600-57808600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr15:57798800-57801000	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr15:57798800-57801200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr15:57798800-57801200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr15:57798800-57801400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr15:57798800-57801600	Weak transcription	Fetal Thymus	thymus
35	chr15:57799000-57801000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:57799000-57801200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:57799000-57801200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr15:57799000-57801200	Weak transcription	NHDF-Ad	bronchial
39	chr15:57799000-57801400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr15:57799000-57801400	Weak transcription	Ovary	ovary
41	chr15:57799000-57801600	Weak transcription	Left Ventricle	heart
42	chr15:57799000-57801600	Weak transcription	NH-A	brain
43	chr15:57799000-57801600	Weak transcription	NHLF	lung
44	chr15:57799000-57802800	Weak transcription	Brain Anterior Caudate	brain
45	chr15:57799000-57809000	Weak transcription	HepG2	liver
46	chr15:57799400-57801200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:57799400-57801600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr15:57799400-57801800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:57799400-57802000	Weak transcription	HUVEC	blood vessel
50	chr15:57799600-57801400	Weak transcription	Fetal Lung	lung

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