Variant report

Variant	rs8029789
Chromosome Location	chr15:58787642-58787643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58786761..58788774-chr15:59039911..59042146,2	K562	blood:
2	chr15:58787065..58789640-chr15:58800910..58803456,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137845	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1823697	1.00[AMR][1000 genomes]
rs1823698	1.00[AMR][1000 genomes]
rs1968688	1.00[AMR][1000 genomes]
rs2034613	1.00[AMR][1000 genomes]
rs2414580	1.00[AMR][1000 genomes]
rs261340	1.00[AMR][1000 genomes]
rs4503731	1.00[AMR][1000 genomes]
rs504846	1.00[AMR][1000 genomes]
rs7165736	1.00[AMR][1000 genomes]
rs7167672	1.00[AMR][1000 genomes]
rs73420505	1.00[AMR][1000 genomes]
rs8037479	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv904268	chr15:58763678-58803225	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58780200-58787800	Weak transcription	Fetal Kidney	kidney
2	chr15:58782600-58789400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:58783200-58789400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:58783400-58788400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr15:58783400-58789600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:58783400-58791600	Enhancers	Fetal Thymus	thymus
7	chr15:58783800-58788200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:58784000-58794800	Weak transcription	Stomach Mucosa	stomach
9	chr15:58784000-58797800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:58784200-58791000	Weak transcription	HMEC	breast
11	chr15:58784400-58791200	Weak transcription	Right Atrium	heart
12	chr15:58784400-58795600	Weak transcription	Liver	Liver
13	chr15:58785000-58797200	Weak transcription	Right Ventricle	heart
14	chr15:58785200-58791200	Weak transcription	Brain Substantia Nigra	brain
15	chr15:58785600-58787800	Weak transcription	K562	blood
16	chr15:58785600-58788200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr15:58785600-58788200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:58785600-58788200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr15:58785600-58788200	Weak transcription	HSMM	muscle
20	chr15:58785600-58788600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr15:58785600-58790800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr15:58785600-58790800	Weak transcription	Fetal Muscle Leg	muscle
23	chr15:58785600-58790800	Weak transcription	HSMMtube	muscle
24	chr15:58786600-58787800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr15:58786600-58789000	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr15:58786600-58789400	Enhancers	Primary T cells from cord blood	blood
27	chr15:58786800-58790000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr15:58787000-58788400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:58787200-58788800	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr15:58787200-58789600	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr15:58787400-58788400	Enhancers	Esophagus	oesophagus
32	chr15:58787400-58788800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr15:58787400-58789200	Enhancers	Primary T cells fromperipheralblood	blood
34	chr15:58787400-58789600	Enhancers	Thymus	Thymus
35	chr15:58787600-58788600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:58787600-58789600	Enhancers	Dnd41	blood
37	chr15:58787600-58792600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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