Variant report

Variant	rs8029891
Chromosome Location	chr15:50440232-50440233
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:50440216..50441453-chr15:50606385..50608916,26	MCF-7	breast:
2	chr15:50437707..50440587-chr15:50443318..50445441,2	MCF-7	breast:
3	chr15:50440034..50441559-chr15:50444185..50445949,2	K562	blood:
4	chr15:50436327..50442259-chr15:50645496..50648593,7	MCF-7	breast:
5	chr15:50436281..50440300-chr15:50607004..50610746,4	MCF-7	breast:
6	chr15:50438596..50441620-chr15:50472701..50475039,3	MCF-7	breast:
7	chr15:50440182..50441527-chr15:50607833..50609167,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104064	Chromatin interaction
ENSG00000104043	Chromatin interaction
ENSG00000244879	Chromatin interaction
ENSG00000140284	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10744955	0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11070759	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11632411	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11637945	0.81[ASN][1000 genomes]
rs11853762	0.87[ASN][1000 genomes]
rs12591392	0.83[ASN][1000 genomes]
rs12913072	0.81[ASN][1000 genomes]
rs16963406	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1797318	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2414029	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2414030	0.81[ASN][1000 genomes]
rs2414032	0.81[ASN][1000 genomes]
rs2433283	1.00[JPT][hapmap]
rs28455006	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28550188	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28566671	0.97[ASN][1000 genomes]
rs28661936	0.81[EUR][1000 genomes]
rs2899458	1.00[JPT][hapmap]
rs3825802	0.82[CEU][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs57187078	0.81[ASN][1000 genomes]
rs59983467	0.81[ASN][1000 genomes]
rs60925368	0.87[ASN][1000 genomes]
rs7174037	0.81[ASN][1000 genomes]
rs7176815	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8030807	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8036133	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8038363	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs933855	0.87[EUR][1000 genomes]
rs933857	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904208	chr15:50428495-50457858	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50430600-50442600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:50437800-50441200	Weak transcription	HMEC	breast
3	chr15:50437800-50441200	Weak transcription	NHEK	skin
4	chr15:50439000-50441400	Weak transcription	NHDF-Ad	bronchial
5	chr15:50439200-50441200	Weak transcription	Hela-S3	cervix
6	chr15:50439200-50441200	Weak transcription	K562	blood
7	chr15:50439400-50440600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:50439400-50440800	Enhancers	Liver	Liver
9	chr15:50439800-50441800	Enhancers	A549	lung

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