Variant report

Variant	rs8038363
Chromosome Location	chr15:50438131-50438132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:50408827..50409344-chr15:50437706..50438255,2	K562	blood:
2	chr15:50437465..50438280-chr15:50607926..50608913,5	MCF-7	breast:
3	chr15:50437707..50440587-chr15:50443318..50445441,2	MCF-7	breast:
4	chr15:50433897..50436991-chr15:50437166..50439975,3	MCF-7	breast:
5	chr15:50436327..50442259-chr15:50645496..50648593,7	MCF-7	breast:
6	chr15:50343838..50344709-chr15:50437300..50438173,3	MCF-7	breast:
7	chr15:50436281..50440300-chr15:50607004..50610746,4	MCF-7	breast:
8	chr15:50435789..50439310-chr15:50472898..50476135,3	MCF-7	breast:
9	chr15:50428036..50430534-chr15:50437642..50439457,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000140284	Chromatin interaction
ENSG00000104064	Chromatin interaction
ENSG00000244879	Chromatin interaction
ENSG00000104043	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10744955	0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11070759	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11632411	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11637945	0.81[ASN][1000 genomes]
rs11853762	0.87[ASN][1000 genomes]
rs12591392	0.83[ASN][1000 genomes]
rs12913072	0.81[ASN][1000 genomes]
rs16963406	0.84[ASW][hapmap];1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes]
rs1797318	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2414029	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2414030	0.81[ASN][1000 genomes]
rs2414032	0.81[ASN][1000 genomes]
rs2433283	1.00[JPT][hapmap]
rs28455006	0.87[EUR][1000 genomes]
rs28550188	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28566671	0.97[ASN][1000 genomes]
rs28661936	0.81[EUR][1000 genomes]
rs2899458	1.00[JPT][hapmap]
rs3825802	0.82[CEU][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs57187078	0.81[ASN][1000 genomes]
rs59983467	0.81[ASN][1000 genomes]
rs60925368	0.87[ASN][1000 genomes]
rs7174037	0.81[ASN][1000 genomes]
rs7176815	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8029891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8030807	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8036133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs933855	0.87[EUR][1000 genomes]
rs933857	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904208	chr15:50428495-50457858	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50430600-50442600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:50434400-50438800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr15:50434600-50439400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:50436000-50438200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr15:50436800-50438200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr15:50436800-50439200	Enhancers	Hela-S3	cervix
7	chr15:50437000-50438800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr15:50437000-50439400	Enhancers	A549	lung
9	chr15:50437200-50438200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:50437200-50438200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:50437400-50439400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:50437600-50438200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr15:50437600-50439000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:50437600-50439400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:50437800-50438800	Enhancers	Liver	Liver
16	chr15:50437800-50441200	Weak transcription	HMEC	breast
17	chr15:50437800-50441200	Weak transcription	NHEK	skin
18	chr15:50438000-50438800	Weak transcription	NHDF-Ad	bronchial
19	chr15:50438000-50439000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:50438000-50439000	Weak transcription	Adipose Nuclei	Adipose
21	chr15:50438000-50439200	Enhancers	HepG2	liver

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