Variant report

Variant	rs8031092
Chromosome Location	chr15:51925521-51925522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10162902	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10163137	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10220901	1.00[AMR][1000 genomes]
rs10220907	1.00[AMR][1000 genomes]
rs10468005	0.88[AFR][1000 genomes]
rs28806588	0.82[AFR][1000 genomes]
rs7168318	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8025629	1.00[AMR][1000 genomes]
rs8028658	0.89[YRI][hapmap]
rs8031824	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8037570	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9806352	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9806669	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
3	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
4	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
5	nsv569408	chr15:51867172-51946100	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51922000-51926600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:51922200-51926600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:51923000-51926400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:51923400-51926400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr15:51923600-51926400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr15:51925400-51925600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:51925400-51925600	Enhancers	Left Ventricle	heart
8	chr15:51925400-51927000	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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