Variant report

Variant	rs80316685
Chromosome Location	chr4:78522352-78522353
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:68)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:68 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr4:78521983-78522524	HCT-116	colon:	n/a	n/a
2	CTCF	chr4:78522055-78522366	K562	blood:	n/a	n/a
3	CTCF	chr4:78522094-78522354	LNCaP	prostate:	n/a	n/a
4	SMC3	chr4:78522019-78522424	Hela-S3	cervix:	n/a	n/a
5	CTCF	chr4:78522074-78522383	HUVEC	blood vessel:	n/a	n/a
6	SMC3	chr4:78521949-78522428	GM12878	blood:	n/a	n/a
7	SMC3	chr4:78521833-78522560	SK-N-SH	brain:	n/a	n/a
8	CTCF	chr4:78522080-78522386	Gliobla	brain:	n/a	n/a
9	RAD21	chr4:78522089-78522361	HepG2	liver:	n/a	n/a
10	CTCF	chr4:78522056-78522352	HepG2	liver:	n/a	n/a
11	CTCF	chr4:78522016-78522457	A549	lung:	n/a	n/a
12	RAD21	chr4:78521978-78522446	A549	lung:	n/a	n/a
13	RUNX3	chr4:78522053-78522380	GM12878	blood:	n/a	n/a
14	CTCF	chr4:78522094-78522359	Kidney_OC	kidney:	n/a	n/a
15	RAD21	chr4:78521815-78522586	SK-N-SH	brain:	n/a	n/a
16	RAD21	chr4:78522027-78522394	HepG2	liver:	n/a	n/a
17	CTCF	chr4:78522085-78522363	MCF-7	breast:	n/a	n/a
18	RAD21	chr4:78522048-78522354	SK-N-SH_RA	brain:	n/a	n/a
19	CTCF	chr4:78522024-78522502	IMR90	lung:	n/a	n/a
20	RAD21	chr4:78521900-78522483	HCT-116	colon:	n/a	n/a
21	CTCF	chr4:78522104-78522352	HepG2	liver:	n/a	n/a
22	ZNF143	chr4:78522073-78522359	H1-hESC	embryonic stem cell:	n/a	n/a
23	CTCF	chr4:78522007-78522430	K562	blood:	n/a	n/a
24	CTCF	chr4:78522118-78522364	Lung_OC	lung:	n/a	n/a
25	CTCF	chr4:78522094-78522371	K562	blood:	n/a	n/a
26	CTCF	chr4:78521977-78522521	MCF-7	breast:	n/a	n/a
27	RAD21	chr4:78522028-78522427	H1-hESC	embryonic stem cell:	n/a	n/a
28	CTCF	chr4:78522081-78522358	ECC-1	luminal epithelium:	n/a	n/a
29	RAD21	chr4:78521909-78522498	A549	lung:	n/a	n/a
30	CTCF	chr4:78522014-78522416	H1-hESC	embryonic stem cell:	n/a	n/a
31	STAT3	chr4:78522095-78522364	MCF10A-Er-Src	breast:	n/a	n/a
32	RAD21	chr4:78521991-78522419	Hela-S3	cervix:	n/a	n/a
33	CTCF	chr4:78522081-78522394	Medullo	brain:	n/a	n/a
34	CTCF	chr4:78522002-78522428	K562	blood:	n/a	n/a
35	RAD21	chr4:78521969-78522486	ECC-1	luminal epithelium:	n/a	n/a
36	CTCF	chr4:78522110-78522365	LNCaP	prostate:	n/a	n/a
37	RAD21	chr4:78522007-78522403	GM12878	blood:	n/a	n/a
38	CTCF	chr4:78521789-78522561	A549	lung:	n/a	n/a
39	CTCF	chr4:78522021-78522420	HepG2	liver:	n/a	n/a
40	RAD21	chr4:78522056-78522371	A549	lung:	n/a	n/a
41	CTCF	chr4:78522107-78522362	GM10266	blood:	n/a	n/a
42	CTCF	chr4:78522085-78522375	GM12878	blood:	n/a	n/a
43	CTCF	chr4:78522014-78522458	GM12878	blood:	n/a	n/a
44	CTCF	chr4:78522260-78522410	A549	lung:	n/a	n/a
45	RAD21	chr4:78521934-78522459	ECC-1	luminal epithelium:	n/a	n/a
46	ZNF143	chr4:78522063-78522375	K562	blood:	n/a	n/a
47	RAD21	chr4:78522070-78522401	SK-N-SH_RA	brain:	n/a	n/a
48	RAD21	chr4:78521988-78522460	H1-hESC	embryonic stem cell:	n/a	n/a
49	CTCF	chr4:78522074-78522464	Spleen_OC	spleen:	n/a	n/a
50	CTCF	chr4:78522111-78522356	Pancreas_OC	pancreas:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:78354236..78354764-chr4:78521810..78522404,2	MCF-7	breast:
2	chr4:78521817..78522700-chr4:78619204..78620028,2	MCF-7	breast:
3	chr4:78306302..78306941-chr4:78521930..78522730,3	MCF-7	breast:
4	chr4:78521938..78522727-chr4:78539308..78540406,4	MCF-7	breast:
5	chr4:78522249..78524588-chr4:78525171..78527688,2	MCF-7	breast:
6	chr4:78521675..78522522-chr5:128453764..128454552,2	K562	blood:
7	chr4:78385938..78387056-chr4:78521715..78522661,6	MCF-7	breast:
8	chr4:78394741..78395310-chr4:78522044..78522649,2	MCF-7	breast:

No data

Variant related genes	Relation type
CXCL13	TF binding region
ENSG00000156234	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829975	chr4:78426210-78565198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1010104	chr4:78520674-78553754	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78521200-78523600	Enhancers	Liver	Liver
2	chr4:78521400-78522400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:78521600-78522400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr4:78522200-78523600	Enhancers	HMEC	breast

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