Variant report

Variant	rs8033275
Chromosome Location	chr15:56138427-56138428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56035905..56037422-chr15:56138325..56141165,2	MCF-7	breast:
2	chr15:38985952..38986472-chr15:56138356..56138929,2	K562	blood:
3	chr15:55940223..55941251-chr15:56138147..56138992,3	MCF-7	breast:
4	chr15:55940297..55941155-chr15:56138005..56138994,3	K562	blood:
5	chr15:56091891..56092629-chr15:56138007..56138913,2	MCF-7	breast:
6	chr15:38985951..38986452-chr15:56138061..56138588,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10459621	0.86[JPT][hapmap]
rs10518830	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs12441843	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs12593593	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs12913186	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1553739	0.86[JPT][hapmap]
rs16976638	0.83[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap]
rs16976648	0.83[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap]
rs16976652	0.86[JPT][hapmap]
rs1863757	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1863758	0.92[ASN][1000 genomes]
rs1912405	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1912406	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1912407	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2175236	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2303579	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2303580	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2414448	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2414449	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2438128	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6493824	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7162927	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7170158	0.86[JPT][hapmap]
rs7170900	0.86[JPT][hapmap]
rs7177177	0.86[JPT][hapmap]
rs72732265	0.84[ASN][1000 genomes]
rs7497861	0.86[JPT][hapmap]
rs8033577	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9806347	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833017	chr15:55965957-56157912	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv3366380	chr15:56003224-56141650	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56115400-56148000	Weak transcription	Ovary	ovary
2	chr15:56116600-56150600	Weak transcription	Right Ventricle	heart
3	chr15:56116800-56162200	Weak transcription	Fetal Heart	heart
4	chr15:56118600-56151000	Weak transcription	Fetal Kidney	kidney
5	chr15:56118800-56147000	Weak transcription	Gastric	stomach
6	chr15:56118800-56149200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:56118800-56151400	Weak transcription	Brain Anterior Caudate	brain
8	chr15:56120000-56144800	Strong transcription	Skeletal Muscle Female	skeletal muscle
9	chr15:56120000-56147800	Weak transcription	HepG2	liver
10	chr15:56120600-56146600	Weak transcription	Pancreas	Pancrea
11	chr15:56120800-56147200	Weak transcription	Thymus	Thymus
12	chr15:56121200-56147200	Weak transcription	Spleen	Spleen
13	chr15:56122400-56145200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr15:56122600-56152000	Weak transcription	Fetal Thymus	thymus
15	chr15:56122600-56153800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr15:56122600-56154800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr15:56122600-56156600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:56122800-56141600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr15:56122800-56147200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr15:56122800-56147600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:56122800-56156000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:56123000-56140200	Weak transcription	Dnd41	blood
23	chr15:56127200-56155400	Strong transcription	Osteobl	bone
24	chr15:56127200-56155800	Strong transcription	HSMM	muscle
25	chr15:56129000-56157400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr15:56129600-56147400	Weak transcription	Esophagus	oesophagus
27	chr15:56129800-56146600	Weak transcription	NHLF	lung
28	chr15:56130600-56140200	Strong transcription	A549	lung
29	chr15:56131800-56138600	Weak transcription	NHDF-Ad	bronchial
30	chr15:56132000-56164800	Weak transcription	Small Intestine	intestine
31	chr15:56132800-56141000	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr15:56133000-56142600	Weak transcription	Hela-S3	cervix
33	chr15:56133000-56152600	Weak transcription	Brain Hippocampus Middle	brain
34	chr15:56133600-56140000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:56133600-56154400	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr15:56134200-56150600	Weak transcription	Left Ventricle	heart
37	chr15:56134400-56140200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr15:56134400-56147400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:56134400-56150000	Weak transcription	Psoas Muscle	Psoas
40	chr15:56134400-56156600	Weak transcription	Colon Smooth Muscle	Colon
41	chr15:56134600-56140000	Weak transcription	HMEC	breast
42	chr15:56134600-56140200	Weak transcription	Adipose Nuclei	Adipose
43	chr15:56134800-56140000	Weak transcription	Fetal Muscle Leg	muscle
44	chr15:56134800-56140200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:56134800-56140200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr15:56134800-56151800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr15:56135000-56140000	Weak transcription	Fetal Stomach	stomach
48	chr15:56135000-56140200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr15:56135000-56156600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr15:56135200-56139400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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