Variant report

Variant	rs9806347
Chromosome Location	chr15:56160529-56160530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10459621	0.86[JPT][hapmap]
rs10518824	0.84[ASN][1000 genomes]
rs10518830	0.86[JPT][hapmap]
rs12441843	0.86[JPT][hapmap]
rs12593593	0.95[JPT][hapmap]
rs12913186	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553739	0.86[JPT][hapmap]
rs16976618	0.83[ASN][1000 genomes]
rs16976638	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs16976648	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs16976652	0.87[JPT][hapmap]
rs1863757	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1863758	1.00[ASN][1000 genomes]
rs1912405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1912406	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1912407	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2175236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2303579	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2303580	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2414448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2414449	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2438128	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57195161	0.85[ASN][1000 genomes]
rs60755985	0.86[ASN][1000 genomes]
rs62043794	0.82[ASN][1000 genomes]
rs6493824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67387007	0.86[ASN][1000 genomes]
rs67497103	0.86[ASN][1000 genomes]
rs7162927	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170158	0.87[JPT][hapmap]
rs7170900	0.87[JPT][hapmap]
rs7177177	0.86[JPT][hapmap]
rs72732270	0.86[ASN][1000 genomes]
rs7497861	0.86[JPT][hapmap]
rs8033275	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8033577	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56116800-56162200	Weak transcription	Fetal Heart	heart
2	chr15:56132000-56164800	Weak transcription	Small Intestine	intestine
3	chr15:56138200-56161800	Weak transcription	K562	blood
4	chr15:56148200-56174400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:56148800-56161800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:56149000-56163600	Weak transcription	Gastric	stomach
7	chr15:56149000-56164800	Weak transcription	Aorta	Aorta
8	chr15:56149000-56177600	Weak transcription	Spleen	Spleen
9	chr15:56152400-56164800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr15:56152800-56165000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr15:56152800-56174600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:56153000-56161000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:56153000-56161000	Weak transcription	HepG2	liver
14	chr15:56153000-56163200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr15:56153000-56163800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:56153000-56164800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr15:56153000-56164800	Weak transcription	Ovary	ovary
18	chr15:56153000-56167400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:56153000-56174000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr15:56153000-56174400	Weak transcription	HSMMtube	muscle
21	chr15:56153000-56174800	Weak transcription	Fetal Intestine Small	intestine
22	chr15:56153000-56176400	Weak transcription	Esophagus	oesophagus
23	chr15:56153200-56161000	Weak transcription	Hela-S3	cervix
24	chr15:56153600-56178600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr15:56153800-56161000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr15:56153800-56161000	Weak transcription	HUVEC	blood vessel
27	chr15:56153800-56165600	Weak transcription	HMEC	breast
28	chr15:56154000-56160600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr15:56154400-56162600	Weak transcription	NHDF-Ad	bronchial
30	chr15:56154400-56164800	Weak transcription	Psoas Muscle	Psoas
31	chr15:56154400-56164800	Weak transcription	NH-A	brain
32	chr15:56154800-56161000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:56155000-56160600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:56155400-56160600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:56155400-56161000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr15:56155400-56165200	Weak transcription	Fetal Intestine Large	intestine
37	chr15:56155400-56174800	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr15:56155400-56175600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr15:56155600-56161000	Weak transcription	Liver	Liver
40	chr15:56155600-56161200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr15:56156200-56165600	Strong transcription	HSMM	muscle
42	chr15:56158200-56161200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr15:56158200-56161800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:56158200-56164800	Weak transcription	Osteobl	bone
45	chr15:56158200-56176400	Weak transcription	Left Ventricle	heart
46	chr15:56159000-56161000	Enhancers	A549	lung
47	chr15:56160200-56160800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:56160200-56161400	Strong transcription	NHEK	skin
49	chr15:56160400-56160600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr15:56160400-56160800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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