Variant report

Variant	rs8036948
Chromosome Location	chr15:92696329-92696330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12901919	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv524871	chr15:92690548-92704180	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92645200-92705600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:92649200-92710800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr15:92661000-92703600	Weak transcription	Small Intestine	intestine
4	chr15:92664000-92707000	Weak transcription	Liver	Liver
5	chr15:92664000-92712000	Weak transcription	Psoas Muscle	Psoas
6	chr15:92666000-92704200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr15:92669600-92703000	Weak transcription	Brain Anterior Caudate	brain
8	chr15:92671600-92708000	Weak transcription	Gastric	stomach
9	chr15:92671800-92707800	Weak transcription	Colonic Mucosa	Colon
10	chr15:92671800-92709200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr15:92672000-92704200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr15:92672200-92703200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:92674800-92707800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr15:92678600-92701000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:92679200-92698800	Weak transcription	Thymus	Thymus
16	chr15:92684000-92713200	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr15:92684200-92701400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:92684400-92713200	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr15:92684600-92701000	Weak transcription	NHEK	skin
20	chr15:92684800-92701400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:92685200-92701000	Weak transcription	HMEC	breast
22	chr15:92686000-92703200	Weak transcription	Right Atrium	heart
23	chr15:92686400-92706800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:92686800-92707600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr15:92687400-92705000	Weak transcription	Colon Smooth Muscle	Colon
26	chr15:92687600-92701000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr15:92687600-92719400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr15:92687800-92700400	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr15:92688400-92700400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr15:92689200-92697600	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr15:92689200-92697600	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:92689200-92700200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr15:92689400-92697400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr15:92689400-92702400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:92689600-92697200	Strong transcription	Left Ventricle	heart
36	chr15:92689600-92706400	Weak transcription	HSMMtube	muscle
37	chr15:92689800-92698600	Strong transcription	Primary T cells from cord blood	blood
38	chr15:92689800-92702400	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr15:92690400-92707800	Weak transcription	Pancreas	Pancrea
40	chr15:92690600-92697000	Weak transcription	Fetal Brain Female	brain
41	chr15:92690600-92714600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr15:92690800-92700800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr15:92690800-92706800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr15:92690800-92707000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:92691000-92698400	Weak transcription	Fetal Thymus	thymus
46	chr15:92691000-92700800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr15:92691000-92701000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:92691200-92701000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr15:92691400-92696800	Weak transcription	Fetal Stomach	stomach
50	chr15:92691400-92701000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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