Variant report

Variant	rs8039058
Chromosome Location	chr15:74184442-74184443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28529448	1.00[AMR][1000 genomes]
rs7169350	1.00[AMR][1000 genomes]
rs7182293	1.00[AMR][1000 genomes]
rs74023576	1.00[AMR][1000 genomes]
rs8025620	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74183800-74185400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:74184000-74184800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
3	chr15:74184200-74185000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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