Variant report

Variant	rs8041797
Chromosome Location	chr15:44643602-44643603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7164866	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8025863	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	esv3410956	chr15:44425145-44823647	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv1044686	chr15:44489534-44697482	Strong transcription Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv1043822	chr15:44491220-44686957	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv1035386	chr15:44498905-44677174	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv904177	chr15:44582886-44821843	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv569299	chr15:44598642-44776075	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
11	nsv904178	chr15:44609796-44724287	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
12	nsv569300	chr15:44609796-44763598	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
13	nsv904179	chr15:44614684-44821843	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44582800-44672200	Weak transcription	HSMM	muscle
2	chr15:44598600-44646800	Weak transcription	Right Ventricle	heart
3	chr15:44628000-44646800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:44629000-44643800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:44633200-44647000	Weak transcription	NHEK	skin
6	chr15:44633200-44647200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:44633200-44653200	Weak transcription	NH-A	brain
8	chr15:44634600-44648200	Weak transcription	Small Intestine	intestine
9	chr15:44637600-44647200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:44640400-44646400	Weak transcription	Pancreas	Pancrea
11	chr15:44640600-44646800	Weak transcription	NHLF	lung
12	chr15:44640800-44646400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr15:44640800-44646800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:44640800-44646800	Weak transcription	HSMMtube	muscle
15	chr15:44640800-44672000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:44641000-44644200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:44641000-44645400	Weak transcription	Fetal Kidney	kidney
18	chr15:44641000-44646800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:44641000-44646800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:44641000-44646800	Weak transcription	Esophagus	oesophagus
21	chr15:44641000-44646800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr15:44641000-44646800	Weak transcription	Thymus	Thymus
23	chr15:44641000-44646800	Weak transcription	Dnd41	blood
24	chr15:44641000-44646800	Weak transcription	Osteobl	bone
25	chr15:44641000-44647000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr15:44641000-44647200	Weak transcription	Gastric	stomach
27	chr15:44641000-44647200	Weak transcription	Hela-S3	cervix
28	chr15:44641000-44648600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:44641000-44648600	Weak transcription	A549	lung
30	chr15:44641000-44649400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:44641000-44651000	Weak transcription	Brain Angular Gyrus	brain
32	chr15:44641000-44666600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr15:44641000-44668800	Weak transcription	Brain Substantia Nigra	brain
34	chr15:44641000-44677000	Weak transcription	Brain Anterior Caudate	brain
35	chr15:44641000-44681600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr15:44641000-44696000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr15:44641200-44645800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr15:44641200-44645800	Weak transcription	Primary T cells from cord blood	blood
39	chr15:44641200-44646800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:44641200-44646800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:44641200-44646800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr15:44641200-44646800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr15:44641200-44646800	Weak transcription	Aorta	Aorta
44	chr15:44641200-44646800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr15:44641200-44646800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr15:44641200-44646800	Weak transcription	Spleen	Spleen
47	chr15:44641200-44647000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr15:44641200-44647000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr15:44641200-44647000	Weak transcription	Left Ventricle	heart
50	chr15:44641200-44647400	Weak transcription	Ovary	ovary

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