Variant report

Variant	rs8042244
Chromosome Location	chr15:39795535-39795536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39788869..39791943-chr15:39792558..39796121,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10152951	0.83[EUR][1000 genomes]
rs11639087	0.89[ASN][1000 genomes]
rs12591824	0.81[ASN][1000 genomes]
rs12906549	0.86[ASN][1000 genomes]
rs13379836	0.96[ASN][1000 genomes]
rs16969143	0.83[EUR][1000 genomes]
rs1947782	0.88[EUR][1000 genomes]
rs4924366	0.86[ASN][1000 genomes]
rs62002368	0.83[EUR][1000 genomes]
rs7169338	0.94[ASN][1000 genomes]
rs8032900	0.87[EUR][1000 genomes]
rs8038823	0.89[ASN][1000 genomes]
rs875682	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs899285	0.92[ASN][1000 genomes]
rs936532	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39789000-39800800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:39789000-39803200	Weak transcription	Left Ventricle	heart
3	chr15:39791600-39796600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:39791600-39803200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:39791600-39803400	Weak transcription	Fetal Lung	lung
6	chr15:39792200-39803600	Weak transcription	Ovary	ovary
7	chr15:39792400-39796400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:39793200-39795600	Enhancers	NHEK	skin
9	chr15:39793400-39795600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:39793600-39795600	Enhancers	HMEC	breast
11	chr15:39793800-39802200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:39793800-39803200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:39793800-39803400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:39794000-39795800	Weak transcription	NHDF-Ad	bronchial
15	chr15:39794000-39796000	Weak transcription	NHLF	lung
16	chr15:39794000-39796600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:39794000-39796600	Weak transcription	NH-A	brain
18	chr15:39794000-39797600	Enhancers	Colon Smooth Muscle	Colon
19	chr15:39794000-39800600	Weak transcription	HSMM	muscle
20	chr15:39794400-39802800	Weak transcription	Fetal Heart	heart
21	chr15:39794600-39795600	Weak transcription	Right Atrium	heart
22	chr15:39794600-39796600	Weak transcription	Lung	lung
23	chr15:39794600-39801000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr15:39795200-39796200	Weak transcription	Osteobl	bone
25	chr15:39795200-39796400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:39795400-39795800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:39795400-39796000	Enhancers	Fetal Thymus	thymus
28	chr15:39795400-39796600	Weak transcription	Fetal Stomach	stomach
29	chr15:39795400-39800600	Weak transcription	K562	blood
30	chr15:39795400-39803200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links