Variant report

Variant	rs875682
Chromosome Location	chr15:39796771-39796772
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10152951	0.83[EUR][1000 genomes]
rs1159994	1.00[CHB][hapmap]
rs11639087	0.88[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs12592357	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs12594419	1.00[CHB][hapmap]
rs12906549	0.84[ASN][1000 genomes]
rs13379836	0.94[ASN][1000 genomes]
rs1478606	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs16969143	0.83[EUR][1000 genomes]
rs1947782	0.88[EUR][1000 genomes]
rs1947783	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs2411292	1.00[CHB][hapmap];0.80[JPT][hapmap]
rs4924366	0.88[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs62002368	0.83[EUR][1000 genomes]
rs6492900	1.00[CHB][hapmap]
rs7169338	0.91[ASN][1000 genomes]
rs719964	0.88[CHB][hapmap];0.80[JPT][hapmap]
rs8032900	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs8038823	0.88[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs8042244	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs899285	0.90[ASN][1000 genomes]
rs936532	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39789000-39800800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:39789000-39803200	Weak transcription	Left Ventricle	heart
3	chr15:39791600-39803200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:39791600-39803400	Weak transcription	Fetal Lung	lung
5	chr15:39792200-39803600	Weak transcription	Ovary	ovary
6	chr15:39793800-39802200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:39793800-39803200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:39793800-39803400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:39794000-39797600	Enhancers	Colon Smooth Muscle	Colon
10	chr15:39794000-39800600	Weak transcription	HSMM	muscle
11	chr15:39794400-39802800	Weak transcription	Fetal Heart	heart
12	chr15:39794600-39801000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr15:39795400-39800600	Weak transcription	K562	blood
14	chr15:39795400-39803200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:39795800-39798000	Enhancers	NHDF-Ad	bronchial
16	chr15:39795800-39799000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:39796000-39797800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:39796000-39798400	Enhancers	NHLF	lung
19	chr15:39796200-39799600	Enhancers	Osteobl	bone
20	chr15:39796400-39797400	Enhancers	Rectal Smooth Muscle	rectum
21	chr15:39796400-39799400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:39796600-39796800	ZNF genes & repeats	Lung	lung
23	chr15:39796600-39797000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:39796600-39797200	Enhancers	HMEC	breast
25	chr15:39796600-39797600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:39796600-39797600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr15:39796600-39797600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:39796600-39797600	Enhancers	Fetal Stomach	stomach
29	chr15:39796600-39799200	Enhancers	NH-A	brain

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