Variant report

Variant	rs8043341
Chromosome Location	chr15:38946194-38946195
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11073335	1.00[CEU][hapmap]
rs12442571	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12442607	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28527790	0.85[AMR][1000 genomes]
rs4924287	0.82[JPT][hapmap]
rs8028815	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8035966	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs8036684	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes]
rs8041149	1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949171	chr15:38232548-39033746	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv904085	chr15:38786114-38985513	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv525770	chr15:38816833-39084956	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1054651	chr15:38827825-39082844	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv542358	chr15:38827825-39082844	Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:38943000-38946200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
2	chr15:38944400-38946200	Enhancers	Primary B cells from cord blood	blood
3	chr15:38944400-38946400	Enhancers	Primary B cells from peripheral blood	blood
4	chr15:38944400-38947600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:38944400-38949200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:38944800-38946200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr15:38945200-38946400	Enhancers	Dnd41	blood
8	chr15:38945200-38948000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr15:38945200-38948200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr15:38945200-38948200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr15:38945200-38949000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr15:38945400-38946200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:38945400-38946200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr15:38945600-38947600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr15:38945600-38948200	Enhancers	Fetal Thymus	thymus
16	chr15:38945800-38946200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:38945800-38946200	Enhancers	Duodenum Mucosa	Duodenum
18	chr15:38945800-38946200	Enhancers	Thymus	Thymus
19	chr15:38945800-38946400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:38945800-38946600	Enhancers	Primary T cells from cord blood	blood
21	chr15:38945800-38946600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:38945800-38948400	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr15:38946000-38946200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:38946000-38946600	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr15:38946000-38948400	Enhancers	Primary T helper cells PMA-I stimulated	--

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