Variant report

Variant	rs805311
Chromosome Location	chr2:54149245-54149246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:54144663..54146823-chr2:54147898..54150124,2	K562	blood:
2	chr2:54146828..54149502-chr2:54150581..54153087,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1232	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2949810	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2949814	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs698857	0.82[AMR][1000 genomes]
rs805313	0.81[AMR][1000 genomes]
rs805316	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs805325	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs805326	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs805327	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs805334	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs805337	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs805338	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs805340	0.91[AMR][1000 genomes]
rs805353	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs805368	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs805383	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs805385	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs805387	0.82[AMR][1000 genomes]
rs805394	0.81[AMR][1000 genomes]
rs805397	0.81[AMR][1000 genomes]
rs805398	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs805399	0.82[AMR][1000 genomes]
rs805401	0.81[AMR][1000 genomes]
rs805404	0.81[AMR][1000 genomes]
rs805406	0.82[AMR][1000 genomes]
rs805407	0.82[AMR][1000 genomes]
rs805408	0.82[AMR][1000 genomes]
rs805409	0.81[AMR][1000 genomes]
rs805411	0.82[AMR][1000 genomes]
rs805413	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs805414	0.82[AMR][1000 genomes]
rs805419	0.81[AMR][1000 genomes]
rs805420	0.81[AMR][1000 genomes]
rs805446	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs805447	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs805449	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs805451	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs805452	0.85[ASN][1000 genomes]
rs809281	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs805311	PSME4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54087000-54168000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr2:54087200-54176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:54087600-54187600	Weak transcription	Stomach Mucosa	stomach
4	chr2:54108200-54177400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:54109800-54179800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:54122200-54172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:54124400-54159200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:54126200-54167600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:54127000-54156000	Weak transcription	Pancreas	Pancrea
10	chr2:54129000-54157600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:54133000-54151800	Weak transcription	Psoas Muscle	Psoas
12	chr2:54133000-54153000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:54133000-54157800	Weak transcription	Colonic Mucosa	Colon
14	chr2:54133200-54154800	Weak transcription	Aorta	Aorta
15	chr2:54133400-54150800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:54133400-54151800	Weak transcription	Lung	lung
17	chr2:54133400-54154800	Weak transcription	Spleen	Spleen
18	chr2:54133600-54151800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr2:54133600-54152000	Weak transcription	Right Ventricle	heart
20	chr2:54135000-54149400	Weak transcription	NHLF	lung
21	chr2:54135600-54172200	Weak transcription	Fetal Heart	heart
22	chr2:54139200-54176600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr2:54139200-54177000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr2:54139400-54153600	Weak transcription	Gastric	stomach
25	chr2:54139400-54158400	Strong transcription	A549	lung
26	chr2:54139400-54167200	Strong transcription	Liver	Liver
27	chr2:54139400-54167800	Strong transcription	Dnd41	blood
28	chr2:54139400-54176200	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr2:54139600-54170800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr2:54139600-54177000	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr2:54141200-54161400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr2:54141200-54166200	Strong transcription	Primary B cells from cord blood	blood
33	chr2:54141200-54167200	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr2:54141400-54166600	Strong transcription	NH-A	brain
35	chr2:54141400-54167400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr2:54141400-54167600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr2:54141400-54170600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr2:54141600-54167000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr2:54141600-54167000	Strong transcription	Osteobl	bone
40	chr2:54142000-54165000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr2:54142000-54165600	Strong transcription	Adipose Nuclei	Adipose
42	chr2:54142000-54167200	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr2:54142000-54167200	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr2:54142200-54167200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr2:54142200-54167800	Strong transcription	HSMM	muscle
46	chr2:54142400-54166200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr2:54142400-54166600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr2:54142600-54153400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr2:54142800-54151000	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr2:54143000-54166200	Strong transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links