Variant report

Variant	rs805325
Chromosome Location	chr2:54144448-54144449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:54138008..54141282-chr2:54142096..54146757,4	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10490468	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs11897282	0.83[CHB][hapmap]
rs1232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17039547	0.92[YRI][hapmap]
rs17045176	0.83[CHB][hapmap]
rs17045203	0.83[CHB][hapmap]
rs2287340	0.83[CHB][hapmap]
rs2287643	0.92[YRI][hapmap]
rs2302797	0.83[CHB][hapmap]
rs2302879	0.84[AMR][1000 genomes]
rs2542572	0.90[JPT][hapmap]
rs2542582	0.81[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap]
rs2542589	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs2542591	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs2542592	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2543629	0.91[CHB][hapmap];0.89[JPT][hapmap]
rs2692519	0.81[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap]
rs2692533	0.81[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap]
rs2909459	1.00[YRI][hapmap]
rs2949810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2949813	0.92[CHB][hapmap]
rs2949814	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34498089	1.00[YRI][hapmap]
rs3770394	0.83[CHB][hapmap]
rs698855	0.90[CEU][hapmap]
rs698857	0.82[AMR][1000 genomes]
rs805311	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs805312	0.84[AMR][1000 genomes]
rs805313	0.83[AMR][1000 genomes]
rs805316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs805319	0.81[AMR][1000 genomes]
rs805321	0.86[CEU][hapmap];0.81[AMR][1000 genomes]
rs805323	0.84[AMR][1000 genomes]
rs805326	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805327	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805328	0.85[CEU][hapmap];0.84[AMR][1000 genomes]
rs805329	0.82[AMR][1000 genomes]
rs805334	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes]
rs805337	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs805338	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs805340	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs805346	0.84[AMR][1000 genomes]
rs805347	0.84[AMR][1000 genomes]
rs805348	0.82[AMR][1000 genomes]
rs805349	0.80[AMR][1000 genomes]
rs805351	0.86[CEU][hapmap]
rs805352	0.90[CEU][hapmap]
rs805353	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs805365	0.90[CEU][hapmap]
rs805368	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs805383	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs805385	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs805386	0.86[CEU][hapmap]
rs805394	0.81[AMR][1000 genomes]
rs805397	0.83[AMR][1000 genomes]
rs805398	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs805399	0.90[CEU][hapmap];0.82[AMR][1000 genomes]
rs805400	0.82[AMR][1000 genomes]
rs805401	0.86[CEU][hapmap];0.83[AMR][1000 genomes]
rs805404	0.90[CEU][hapmap];0.83[AMR][1000 genomes]
rs805406	0.82[AMR][1000 genomes]
rs805407	0.82[AMR][1000 genomes]
rs805408	0.82[CEU][hapmap];0.82[AMR][1000 genomes]
rs805409	0.81[AMR][1000 genomes]
rs805411	0.82[AMR][1000 genomes]
rs805413	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs805414	0.82[AMR][1000 genomes]
rs805415	0.81[AMR][1000 genomes]
rs805419	0.81[AMR][1000 genomes]
rs805420	0.81[AMR][1000 genomes]
rs805426	0.90[CEU][hapmap]
rs805437	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs805446	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs805447	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs805449	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs805451	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs805452	0.81[ASN][1000 genomes]
rs809281	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs809282	0.82[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs805325	PSME4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54087000-54168000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr2:54087200-54176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:54087600-54187600	Weak transcription	Stomach Mucosa	stomach
4	chr2:54108200-54177400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:54109800-54179800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:54113200-54144600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:54122200-54172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr2:54124400-54159200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:54126200-54167600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:54127000-54156000	Weak transcription	Pancreas	Pancrea
11	chr2:54128000-54145400	Weak transcription	Ovary	ovary
12	chr2:54128800-54144600	Weak transcription	Fetal Brain Male	brain
13	chr2:54129000-54157600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr2:54130400-54146600	Weak transcription	Small Intestine	intestine
15	chr2:54133000-54145400	Weak transcription	Brain Germinal Matrix	brain
16	chr2:54133000-54151800	Weak transcription	Psoas Muscle	Psoas
17	chr2:54133000-54153000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:54133000-54157800	Weak transcription	Colonic Mucosa	Colon
19	chr2:54133200-54154800	Weak transcription	Aorta	Aorta
20	chr2:54133400-54145600	Weak transcription	Esophagus	oesophagus
21	chr2:54133400-54150800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:54133400-54151800	Weak transcription	Lung	lung
23	chr2:54133400-54154800	Weak transcription	Spleen	Spleen
24	chr2:54133600-54151800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr2:54133600-54152000	Weak transcription	Right Ventricle	heart
26	chr2:54133800-54145400	Weak transcription	Thymus	Thymus
27	chr2:54135000-54144600	Weak transcription	Brain Substantia Nigra	brain
28	chr2:54135000-54148000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr2:54135000-54149400	Weak transcription	NHLF	lung
30	chr2:54135200-54144600	Weak transcription	Brain Angular Gyrus	brain
31	chr2:54135200-54145200	Weak transcription	Fetal Brain Female	brain
32	chr2:54135200-54146200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr2:54135200-54147400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr2:54135400-54146200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr2:54135600-54144600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr2:54135600-54145000	Weak transcription	Colon Smooth Muscle	Colon
37	chr2:54135600-54145200	Weak transcription	Brain Hippocampus Middle	brain
38	chr2:54135600-54145600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr2:54135600-54146600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr2:54135600-54172200	Weak transcription	Fetal Heart	heart
41	chr2:54136000-54144600	Weak transcription	K562	blood
42	chr2:54137200-54144600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr2:54137200-54146600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr2:54137400-54144600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr2:54137400-54145000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr2:54137400-54145000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr2:54137600-54144800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr2:54137800-54144800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr2:54137800-54145600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr2:54137800-54146400	Weak transcription	HSMMtube	muscle

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