Variant report

Variant	rs805328
Chromosome Location	chr2:54145761-54145762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:54144663..54146823-chr2:54147898..54150124,2	K562	blood:
2	chr2:54145281..54148173-chr2:54197251..54198835,2	MCF-7	breast:
3	chr2:54138008..54141282-chr2:54142096..54146757,4	K562	blood:

Variant related genes	Relation type
ENSG00000170634	Chromatin interaction
ENSG00000068878	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10183655	0.90[CHB][hapmap]
rs11683741	0.81[AMR][1000 genomes]
rs11689025	0.81[AMR][1000 genomes]
rs11890838	0.90[CHB][hapmap];0.83[JPT][hapmap];0.81[YRI][hapmap]
rs11898855	0.81[AMR][1000 genomes]
rs1232	0.81[CEU][hapmap]
rs17039547	0.94[JPT][hapmap]
rs17045199	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs17045452	0.90[CHB][hapmap]
rs17045474	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs17045488	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs2253760	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs2287643	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs2302879	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2542571	0.95[CHB][hapmap]
rs2542575	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs2692514	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs2692516	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2692534	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs28851028	0.82[AMR][1000 genomes]
rs2909459	0.90[CHB][hapmap];0.90[AMR][1000 genomes]
rs2949810	0.84[AMR][1000 genomes]
rs2949815	0.82[AMR][1000 genomes]
rs34498089	0.88[JPT][hapmap]
rs3731967	0.90[CHB][hapmap]
rs4671746	0.90[AMR][1000 genomes]
rs55692047	0.87[AMR][1000 genomes]
rs56302494	0.90[AMR][1000 genomes]
rs62139336	0.89[AMR][1000 genomes]
rs6545377	0.81[AMR][1000 genomes]
rs6545381	0.82[AMR][1000 genomes]
rs6713088	0.84[JPT][hapmap]
rs6714450	0.81[AMR][1000 genomes]
rs6746965	0.85[CHB][hapmap]
rs698855	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs698857	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7559384	0.82[AMR][1000 genomes]
rs805310	0.90[CHB][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs805312	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs805313	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs805314	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs805315	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs805316	0.85[CEU][hapmap]
rs805319	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs805321	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs805323	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs805325	0.84[AMR][1000 genomes]
rs805326	0.84[AMR][1000 genomes]
rs805327	0.84[AMR][1000 genomes]
rs805329	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs805334	0.81[YRI][hapmap]
rs805344	0.83[AMR][1000 genomes]
rs805346	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs805347	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs805348	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs805349	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs805351	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs805352	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs805354	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs805355	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs805356	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs805357	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs805360	0.83[YRI][hapmap]
rs805362	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs805363	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs805365	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs805376	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs805377	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs805378	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs805382	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs805384	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs805386	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs805387	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs805388	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs805390	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs805394	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs805397	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs805398	0.81[AMR][1000 genomes]
rs805399	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs805400	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs805401	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs805404	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs805406	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs805407	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs805408	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs805409	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs805411	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs805413	0.81[AMR][1000 genomes]
rs805414	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs805415	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs805416	0.91[ASN][1000 genomes]
rs805419	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs805420	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs805425	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs805426	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs805428	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs805429	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs805447	0.81[YRI][hapmap];0.81[AMR][1000 genomes]
rs809281	0.81[AMR][1000 genomes]
rs809282	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs805328	PSME4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54087000-54168000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr2:54087200-54176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:54087600-54187600	Weak transcription	Stomach Mucosa	stomach
4	chr2:54108200-54177400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:54109800-54179800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:54122200-54172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:54124400-54159200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:54126200-54167600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:54127000-54156000	Weak transcription	Pancreas	Pancrea
10	chr2:54129000-54157600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:54130400-54146600	Weak transcription	Small Intestine	intestine
12	chr2:54133000-54151800	Weak transcription	Psoas Muscle	Psoas
13	chr2:54133000-54153000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:54133000-54157800	Weak transcription	Colonic Mucosa	Colon
15	chr2:54133200-54154800	Weak transcription	Aorta	Aorta
16	chr2:54133400-54150800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:54133400-54151800	Weak transcription	Lung	lung
18	chr2:54133400-54154800	Weak transcription	Spleen	Spleen
19	chr2:54133600-54151800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr2:54133600-54152000	Weak transcription	Right Ventricle	heart
21	chr2:54135000-54148000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr2:54135000-54149400	Weak transcription	NHLF	lung
23	chr2:54135200-54146200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr2:54135200-54147400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr2:54135400-54146200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr2:54135600-54146600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr2:54135600-54172200	Weak transcription	Fetal Heart	heart
28	chr2:54137200-54146600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr2:54137800-54146400	Weak transcription	HSMMtube	muscle
30	chr2:54139200-54148400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:54139200-54176600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr2:54139200-54177000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr2:54139400-54153600	Weak transcription	Gastric	stomach
34	chr2:54139400-54158400	Strong transcription	A549	lung
35	chr2:54139400-54167200	Strong transcription	Liver	Liver
36	chr2:54139400-54167800	Strong transcription	Dnd41	blood
37	chr2:54139400-54176200	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr2:54139600-54170800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr2:54139600-54177000	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr2:54140400-54146800	Strong transcription	Hela-S3	cervix
41	chr2:54141000-54146000	Strong transcription	Fetal Thymus	thymus
42	chr2:54141200-54146400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr2:54141200-54147200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr2:54141200-54147600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr2:54141200-54147600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr2:54141200-54161400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr2:54141200-54166200	Strong transcription	Primary B cells from cord blood	blood
48	chr2:54141200-54167200	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr2:54141400-54166600	Strong transcription	NH-A	brain
50	chr2:54141400-54167400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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