The 2.0 version of rSNPBase

Variant report

Variant rs62139336
Chromosome Location chr2:54212233-54212234
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54199000-54214200 Weak transcription Stomach Mucosa stomach
2 chr2:54199000-54214400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr2:54199000-54215600 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr2:54199000-54221600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr2:54199000-54228800 Weak transcription Aorta Aorta
6 chr2:54199200-54213800 Weak transcription Psoas Muscle Psoas
7 chr2:54199200-54213800 Weak transcription Small Intestine intestine
8 chr2:54199200-54214200 Weak transcription Colonic Mucosa Colon
9 chr2:54199200-54214200 Weak transcription Fetal Heart heart
10 chr2:54199200-54214200 Weak transcription Fetal Kidney kidney
11 chr2:54199200-54214200 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr2:54199200-54214200 Weak transcription Rectal Smooth Muscle rectum
13 chr2:54199200-54214200 Weak transcription NH-A brain
14 chr2:54199200-54214400 Weak transcription A549 lung
15 chr2:54199200-54214600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
16 chr2:54200000-54214200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
17 chr2:54200200-54212800 Weak transcription HUES6 Cell Line embryonic stem cell
18 chr2:54200200-54216600 Weak transcription Right Ventricle heart
19 chr2:54200400-54218400 Weak transcription Primary T killer memory cells from peripheral blood blood
20 chr2:54202200-54212600 Weak transcription HepG2 liver
21 chr2:54202600-54214200 Weak transcription Muscle Satellite Cultured Cells --
22 chr2:54202600-54214400 Weak transcription NHDF-Ad bronchial
23 chr2:54202800-54214800 Weak transcription NHLF lung
24 chr2:54202800-54215800 Weak transcription NHEK skin
25 chr2:54203200-54214200 Weak transcription Colon Smooth Muscle Colon
26 chr2:54203600-54214800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr2:54203800-54214200 Weak transcription Brain Anterior Caudate brain
28 chr2:54204400-54226400 Weak transcription Pancreas Pancrea
29 chr2:54204600-54214000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr2:54204600-54214200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr2:54205000-54213800 Weak transcription Primary T helper cells PMA-I stimulated --
32 chr2:54205200-54222600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr2:54205800-54212400 Weak transcription Skeletal Muscle Female skeletal muscle
34 chr2:54206000-54212800 Weak transcription Left Ventricle heart
35 chr2:54206000-54214200 Weak transcription Primary T helper naive cells from peripheral blood blood
36 chr2:54206000-54214200 Weak transcription GM12878-XiMat blood
37 chr2:54206000-54216600 Weak transcription Esophagus oesophagus
38 chr2:54206000-54221600 Weak transcription Thymus Thymus
39 chr2:54206000-54226400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
40 chr2:54206200-54214200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr2:54206200-54214200 Weak transcription Adipose Nuclei Adipose
42 chr2:54206200-54214200 Weak transcription Brain Hippocampus Middle brain
43 chr2:54206200-54214200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
44 chr2:54206200-54214200 Weak transcription Brain Substantia Nigra brain
45 chr2:54206200-54214400 Weak transcription Primary T helper cells fromperipheralblood blood
46 chr2:54206400-54220000 Weak transcription Primary T regulatory cells fromperipheralblood blood
47 chr2:54207800-54213000 Weak transcription HUES64 Cell Line embryonic stem cell
48 chr2:54208200-54214000 Weak transcription Liver Liver
49 chr2:54208200-54214200 Weak transcription HSMMtube muscle
50 chr2:54208200-54221400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015