The 2.0 version of rSNPBase

Variant report

Variant rs11683741
Chromosome Location chr2:54207548-54207549
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54198600-54209000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr2:54198600-54212000 Weak transcription Spleen Spleen
3 chr2:54199000-54208600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr2:54199000-54214200 Weak transcription Stomach Mucosa stomach
5 chr2:54199000-54214400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr2:54199000-54215600 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr2:54199000-54221600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
8 chr2:54199000-54228800 Weak transcription Aorta Aorta
9 chr2:54199200-54207600 Weak transcription Brain Germinal Matrix brain
10 chr2:54199200-54207600 Weak transcription Fetal Brain Female brain
11 chr2:54199200-54207800 Weak transcription Primary hematopoietic stem cells blood
12 chr2:54199200-54208000 Weak transcription Primary monocytes fromperipheralblood blood
13 chr2:54199200-54209600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
14 chr2:54199200-54210600 Weak transcription Brain Cingulate Gyrus brain
15 chr2:54199200-54213800 Weak transcription Psoas Muscle Psoas
16 chr2:54199200-54213800 Weak transcription Small Intestine intestine
17 chr2:54199200-54214200 Weak transcription Colonic Mucosa Colon
18 chr2:54199200-54214200 Weak transcription Fetal Heart heart
19 chr2:54199200-54214200 Weak transcription Fetal Kidney kidney
20 chr2:54199200-54214200 Weak transcription Pancreatic Islets Pancreatic Islet
21 chr2:54199200-54214200 Weak transcription Rectal Smooth Muscle rectum
22 chr2:54199200-54214200 Weak transcription NH-A brain
23 chr2:54199200-54214400 Weak transcription A549 lung
24 chr2:54199200-54214600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
25 chr2:54199400-54209600 Weak transcription HSMM muscle
26 chr2:54200000-54214200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
27 chr2:54200200-54208200 Weak transcription Primary B cells from cord blood blood
28 chr2:54200200-54208400 Weak transcription Gastric stomach
29 chr2:54200200-54211400 Strong transcription Fetal Muscle Leg muscle
30 chr2:54200200-54212800 Weak transcription HUES6 Cell Line embryonic stem cell
31 chr2:54200200-54216600 Weak transcription Right Ventricle heart
32 chr2:54200400-54209800 Weak transcription Primary T helper naive cells fromperipheralblood blood
33 chr2:54200400-54218400 Weak transcription Primary T killer memory cells from peripheral blood blood
34 chr2:54200800-54208800 Strong transcription Fetal Stomach stomach
35 chr2:54201000-54207800 Strong transcription Placenta Placenta
36 chr2:54201000-54208200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr2:54201200-54208200 Strong transcription Primary B cells from peripheral blood blood
38 chr2:54201200-54209000 Strong transcription Fetal Muscle Trunk muscle
39 chr2:54201200-54209600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr2:54201400-54208000 Strong transcription Fetal Lung lung
41 chr2:54201400-54208400 Strong transcription Osteobl bone
42 chr2:54201400-54208800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr2:54201400-54209000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr2:54201400-54209000 Strong transcription Fetal Adrenal Gland Adrenal Gland
45 chr2:54201400-54209000 Strong transcription Fetal Intestine Large intestine
46 chr2:54201400-54211400 Strong transcription Breast Myoepithelial Primary Cells Breast
47 chr2:54201400-54211400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr2:54201800-54211600 Strong transcription Primary T cells from cord blood blood
49 chr2:54202000-54208200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr2:54202200-54208200 Strong transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015