The 2.0 version of rSNPBase

Variant report

Variant rs7559947
Chromosome Location chr2:54209028-54209029
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54198600-54212000 Weak transcription Spleen Spleen
2 chr2:54199000-54214200 Weak transcription Stomach Mucosa stomach
3 chr2:54199000-54214400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr2:54199000-54215600 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr2:54199000-54221600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr2:54199000-54228800 Weak transcription Aorta Aorta
7 chr2:54199200-54209600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr2:54199200-54210600 Weak transcription Brain Cingulate Gyrus brain
9 chr2:54199200-54213800 Weak transcription Psoas Muscle Psoas
10 chr2:54199200-54213800 Weak transcription Small Intestine intestine
11 chr2:54199200-54214200 Weak transcription Colonic Mucosa Colon
12 chr2:54199200-54214200 Weak transcription Fetal Heart heart
13 chr2:54199200-54214200 Weak transcription Fetal Kidney kidney
14 chr2:54199200-54214200 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr2:54199200-54214200 Weak transcription Rectal Smooth Muscle rectum
16 chr2:54199200-54214200 Weak transcription NH-A brain
17 chr2:54199200-54214400 Weak transcription A549 lung
18 chr2:54199200-54214600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr2:54199400-54209600 Weak transcription HSMM muscle
20 chr2:54200000-54214200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
21 chr2:54200200-54211400 Strong transcription Fetal Muscle Leg muscle
22 chr2:54200200-54212800 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr2:54200200-54216600 Weak transcription Right Ventricle heart
24 chr2:54200400-54209800 Weak transcription Primary T helper naive cells fromperipheralblood blood
25 chr2:54200400-54218400 Weak transcription Primary T killer memory cells from peripheral blood blood
26 chr2:54201200-54209600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr2:54201400-54211400 Strong transcription Breast Myoepithelial Primary Cells Breast
28 chr2:54201400-54211400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr2:54201800-54211600 Strong transcription Primary T cells from cord blood blood
30 chr2:54202200-54212600 Weak transcription HepG2 liver
31 chr2:54202600-54211800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr2:54202600-54214200 Weak transcription Muscle Satellite Cultured Cells --
33 chr2:54202600-54214400 Weak transcription NHDF-Ad bronchial
34 chr2:54202800-54210000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr2:54202800-54214800 Weak transcription NHLF lung
36 chr2:54202800-54215800 Weak transcription NHEK skin
37 chr2:54203200-54214200 Weak transcription Colon Smooth Muscle Colon
38 chr2:54203600-54214800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
39 chr2:54203800-54210400 Weak transcription Primary T killer naive cells fromperipheralblood blood
40 chr2:54203800-54211600 Weak transcription Placenta Amnion Placenta Amnion
41 chr2:54203800-54214200 Weak transcription Brain Anterior Caudate brain
42 chr2:54204000-54209400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
43 chr2:54204000-54210200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr2:54204400-54209400 Strong transcription Cortex derived primary cultured neurospheres brain
45 chr2:54204400-54226400 Weak transcription Pancreas Pancrea
46 chr2:54204600-54209200 Weak transcription Primary T cells fromperipheralblood blood
47 chr2:54204600-54214000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr2:54204600-54214200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
49 chr2:54205000-54213800 Weak transcription Primary T helper cells PMA-I stimulated --
50 chr2:54205200-54222600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015