The 2.0 version of rSNPBase

Variant report

Variant rs11689025
Chromosome Location chr2:54207622-54207623
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54198600-54209000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr2:54198600-54212000 Weak transcription Spleen Spleen
3 chr2:54199000-54208600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr2:54199000-54214200 Weak transcription Stomach Mucosa stomach
5 chr2:54199000-54214400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr2:54199000-54215600 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr2:54199000-54221600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
8 chr2:54199000-54228800 Weak transcription Aorta Aorta
9 chr2:54199200-54207800 Weak transcription Primary hematopoietic stem cells blood
10 chr2:54199200-54208000 Weak transcription Primary monocytes fromperipheralblood blood
11 chr2:54199200-54209600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr2:54199200-54210600 Weak transcription Brain Cingulate Gyrus brain
13 chr2:54199200-54213800 Weak transcription Psoas Muscle Psoas
14 chr2:54199200-54213800 Weak transcription Small Intestine intestine
15 chr2:54199200-54214200 Weak transcription Colonic Mucosa Colon
16 chr2:54199200-54214200 Weak transcription Fetal Heart heart
17 chr2:54199200-54214200 Weak transcription Fetal Kidney kidney
18 chr2:54199200-54214200 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr2:54199200-54214200 Weak transcription Rectal Smooth Muscle rectum
20 chr2:54199200-54214200 Weak transcription NH-A brain
21 chr2:54199200-54214400 Weak transcription A549 lung
22 chr2:54199200-54214600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
23 chr2:54199400-54209600 Weak transcription HSMM muscle
24 chr2:54200000-54214200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
25 chr2:54200200-54208200 Weak transcription Primary B cells from cord blood blood
26 chr2:54200200-54208400 Weak transcription Gastric stomach
27 chr2:54200200-54211400 Strong transcription Fetal Muscle Leg muscle
28 chr2:54200200-54212800 Weak transcription HUES6 Cell Line embryonic stem cell
29 chr2:54200200-54216600 Weak transcription Right Ventricle heart
30 chr2:54200400-54209800 Weak transcription Primary T helper naive cells fromperipheralblood blood
31 chr2:54200400-54218400 Weak transcription Primary T killer memory cells from peripheral blood blood
32 chr2:54200800-54208800 Strong transcription Fetal Stomach stomach
33 chr2:54201000-54207800 Strong transcription Placenta Placenta
34 chr2:54201000-54208200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr2:54201200-54208200 Strong transcription Primary B cells from peripheral blood blood
36 chr2:54201200-54209000 Strong transcription Fetal Muscle Trunk muscle
37 chr2:54201200-54209600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr2:54201400-54208000 Strong transcription Fetal Lung lung
39 chr2:54201400-54208400 Strong transcription Osteobl bone
40 chr2:54201400-54208800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr2:54201400-54209000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr2:54201400-54209000 Strong transcription Fetal Adrenal Gland Adrenal Gland
43 chr2:54201400-54209000 Strong transcription Fetal Intestine Large intestine
44 chr2:54201400-54211400 Strong transcription Breast Myoepithelial Primary Cells Breast
45 chr2:54201400-54211400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr2:54201800-54211600 Strong transcription Primary T cells from cord blood blood
47 chr2:54202000-54208200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
48 chr2:54202200-54208200 Strong transcription Fetal Intestine Small intestine
49 chr2:54202200-54212600 Weak transcription HepG2 liver
50 chr2:54202400-54208000 Strong transcription Ovary ovary

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Last update: Aug 31, 2015