Variant report

Variant	rs809282
Chromosome Location	chr2:54107336-54107337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:54106493..54108127-chr2:54111141..54112722,2	K562	blood:

Extended variants
information (count: 99 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10183655	0.86[CHB][hapmap]
rs11683741	0.80[AMR][1000 genomes]
rs11689025	0.80[AMR][1000 genomes]
rs11890838	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs11898855	0.82[AMR][1000 genomes]
rs1232	0.83[CEU][hapmap]
rs17045199	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs17045452	0.91[CHB][hapmap]
rs17045474	0.83[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs17045488	0.83[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap]
rs2253760	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs2302879	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2542571	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs2542575	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs2692514	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2692516	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2692534	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs28851028	0.84[AMR][1000 genomes]
rs2909459	0.86[CEU][hapmap];0.91[CHB][hapmap];0.92[AMR][1000 genomes]
rs2949810	0.82[AMR][1000 genomes]
rs3731967	0.86[CHB][hapmap]
rs4671746	0.89[AMR][1000 genomes]
rs55692047	0.89[AMR][1000 genomes]
rs56302494	0.89[AMR][1000 genomes]
rs62139336	0.90[AMR][1000 genomes]
rs6545377	0.80[AMR][1000 genomes]
rs6545381	0.83[AMR][1000 genomes]
rs6714450	0.82[AMR][1000 genomes]
rs6746965	0.83[CHB][hapmap]
rs698855	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs698857	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7559384	0.81[AMR][1000 genomes]
rs7583622	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs766075	0.86[CHB][hapmap]
rs805310	0.91[CHB][hapmap];0.81[AMR][1000 genomes]
rs805312	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs805313	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs805314	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs805315	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs805316	0.87[CEU][hapmap];0.81[AMR][1000 genomes]
rs805319	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs805321	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs805323	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs805325	0.82[AMR][1000 genomes]
rs805326	0.82[AMR][1000 genomes]
rs805327	0.82[AMR][1000 genomes]
rs805328	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs805329	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs805337	0.81[AMR][1000 genomes]
rs805338	0.81[AMR][1000 genomes]
rs805344	0.81[AMR][1000 genomes]
rs805346	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs805347	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs805348	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs805349	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs805351	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs805352	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs805354	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs805355	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs805356	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs805357	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs805362	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs805363	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs805365	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs805376	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs805377	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs805378	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs805382	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs805383	0.81[AMR][1000 genomes]
rs805384	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs805385	0.83[AMR][1000 genomes]
rs805386	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805387	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805388	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805390	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805394	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805397	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs805398	0.82[AMR][1000 genomes]
rs805399	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs805400	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs805401	0.91[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs805404	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs805406	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs805407	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs805408	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs805409	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs805411	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs805413	0.82[AMR][1000 genomes]
rs805414	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs805415	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs805416	0.91[ASN][1000 genomes]
rs805419	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs805420	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs805425	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs805426	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs805428	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs805429	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs805449	0.81[AMR][1000 genomes]
rs805451	0.81[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs809282	PSME4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54087000-54168000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr2:54087200-54176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:54087400-54112200	Weak transcription	Psoas Muscle	Psoas
4	chr2:54087400-54112600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr2:54087400-54117400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:54087400-54137600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:54087600-54110800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:54087600-54113600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:54087600-54116600	Weak transcription	Pancreas	Pancrea
10	chr2:54087600-54117000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr2:54087600-54187600	Weak transcription	Stomach Mucosa	stomach
12	chr2:54087800-54112200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:54088000-54113800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr2:54088400-54137200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:54088600-54138000	Strong transcription	Primary B cells from peripheral blood	blood
16	chr2:54089800-54136000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr2:54090200-54107400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:54090200-54137800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr2:54090200-54138200	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr2:54090400-54137600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr2:54090800-54137400	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr2:54091000-54137000	Strong transcription	Fetal Thymus	thymus
23	chr2:54091000-54137800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr2:54091000-54138000	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr2:54091200-54138000	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr2:54091400-54137600	Strong transcription	Liver	Liver
27	chr2:54093800-54124000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:54094000-54110600	Weak transcription	Colon Smooth Muscle	Colon
29	chr2:54094000-54137800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr2:54094600-54110400	Weak transcription	Esophagus	oesophagus
31	chr2:54094800-54113200	Weak transcription	Spleen	Spleen
32	chr2:54095400-54111800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr2:54095600-54109400	Weak transcription	NHLF	lung
34	chr2:54098400-54107800	Weak transcription	Right Atrium	heart
35	chr2:54099200-54137400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr2:54100400-54137800	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr2:54100400-54137800	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr2:54100400-54140200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr2:54100600-54123000	Strong transcription	Primary hematopoietic stem cells	blood
40	chr2:54100600-54137400	Strong transcription	Placenta	Placenta
41	chr2:54100600-54137800	Strong transcription	Primary B cells from cord blood	blood
42	chr2:54100600-54141200	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr2:54100800-54107600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr2:54100800-54107800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr2:54100800-54138000	Strong transcription	Fetal Muscle Trunk	muscle
46	chr2:54101000-54108000	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr2:54101400-54110800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr2:54101800-54108800	Weak transcription	Fetal Brain Male	brain
49	chr2:54101800-54110600	Weak transcription	Fetal Heart	heart
50	chr2:54102000-54110400	Weak transcription	Right Ventricle	heart

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