The 2.0 version of rSNPBase

Variant report

Variant rs805376
Chromosome Location chr2:54090856-54090857
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54074800-54096600 Weak transcription Hela-S3 cervix
2 chr2:54078600-54092200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr2:54078800-54092400 Weak transcription K562 blood
4 chr2:54079000-54091800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr2:54081200-54091800 Weak transcription Primary neutrophils fromperipheralblood blood
6 chr2:54081600-54091200 Weak transcription Skeletal Muscle Female skeletal muscle
7 chr2:54081600-54091600 Weak transcription HSMMtube muscle
8 chr2:54081800-54092200 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr2:54081800-54094400 Weak transcription Small Intestine intestine
10 chr2:54082000-54091000 Weak transcription iPS-20b Cell Line embryonic stem cell
11 chr2:54082000-54091200 Weak transcription Muscle Satellite Cultured Cells --
12 chr2:54082000-54091200 Weak transcription Placenta Placenta
13 chr2:54082000-54092000 Weak transcription GM12878-XiMat blood
14 chr2:54082800-54093800 Weak transcription Spleen Spleen
15 chr2:54083800-54091200 Weak transcription Dnd41 blood
16 chr2:54083800-54092800 Weak transcription Colon Smooth Muscle Colon
17 chr2:54084000-54102000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
18 chr2:54084200-54093200 Weak transcription Primary T killer memory cells from peripheral blood blood
19 chr2:54085400-54106600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr2:54086600-54101200 Weak transcription Fetal Brain Male brain
21 chr2:54087000-54168000 Strong transcription Monocytes-CD14+_RO01746 blood
22 chr2:54087200-54176000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
23 chr2:54087400-54091800 Weak transcription NHDF-Ad bronchial
24 chr2:54087400-54092000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
25 chr2:54087400-54092000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
26 chr2:54087400-54092400 Weak transcription Gastric stomach
27 chr2:54087400-54093800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr2:54087400-54097400 Strong transcription Primary B cells from cord blood blood
29 chr2:54087400-54112200 Weak transcription Psoas Muscle Psoas
30 chr2:54087400-54112600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
31 chr2:54087400-54117400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr2:54087400-54137600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr2:54087600-54091000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr2:54087600-54091000 Weak transcription Fetal Adrenal Gland Adrenal Gland
35 chr2:54087600-54091000 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr2:54087600-54091200 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr2:54087600-54091200 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr2:54087600-54091200 Weak transcription NH-A brain
39 chr2:54087600-54091200 Weak transcription NHLF lung
40 chr2:54087600-54091800 Weak transcription Fetal Lung lung
41 chr2:54087600-54092000 Weak transcription Aorta Aorta
42 chr2:54087600-54092000 Weak transcription Thymus Thymus
43 chr2:54087600-54092200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr2:54087600-54092200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
45 chr2:54087600-54092200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
46 chr2:54087600-54092200 Weak transcription Colonic Mucosa Colon
47 chr2:54087600-54092200 Weak transcription Ovary ovary
48 chr2:54087600-54092200 Weak transcription Rectal Smooth Muscle rectum
49 chr2:54087600-54093000 Weak transcription H9 Cell Line embryonic stem cell
50 chr2:54087600-54093800 Weak transcription Esophagus oesophagus

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Last update: Aug 31, 2015