The 2.0 version of rSNPBase

Variant report

Variant rs805378
Chromosome Location chr2:54091885-54091886
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54074800-54096600 Weak transcription Hela-S3 cervix
2 chr2:54078600-54092200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr2:54078800-54092400 Weak transcription K562 blood
4 chr2:54081800-54092200 Weak transcription Skeletal Muscle Male skeletal muscle
5 chr2:54081800-54094400 Weak transcription Small Intestine intestine
6 chr2:54082000-54092000 Weak transcription GM12878-XiMat blood
7 chr2:54082800-54093800 Weak transcription Spleen Spleen
8 chr2:54083800-54092800 Weak transcription Colon Smooth Muscle Colon
9 chr2:54084000-54102000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
10 chr2:54084200-54093200 Weak transcription Primary T killer memory cells from peripheral blood blood
11 chr2:54085400-54106600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr2:54086600-54101200 Weak transcription Fetal Brain Male brain
13 chr2:54087000-54168000 Strong transcription Monocytes-CD14+_RO01746 blood
14 chr2:54087200-54176000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
15 chr2:54087400-54092000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
16 chr2:54087400-54092000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr2:54087400-54092400 Weak transcription Gastric stomach
18 chr2:54087400-54093800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr2:54087400-54097400 Strong transcription Primary B cells from cord blood blood
20 chr2:54087400-54112200 Weak transcription Psoas Muscle Psoas
21 chr2:54087400-54112600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr2:54087400-54117400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr2:54087400-54137600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr2:54087600-54092000 Weak transcription Aorta Aorta
25 chr2:54087600-54092000 Weak transcription Thymus Thymus
26 chr2:54087600-54092200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr2:54087600-54092200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
28 chr2:54087600-54092200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr2:54087600-54092200 Weak transcription Colonic Mucosa Colon
30 chr2:54087600-54092200 Weak transcription Ovary ovary
31 chr2:54087600-54092200 Weak transcription Rectal Smooth Muscle rectum
32 chr2:54087600-54093000 Weak transcription H9 Cell Line embryonic stem cell
33 chr2:54087600-54093800 Weak transcription Esophagus oesophagus
34 chr2:54087600-54093800 Weak transcription Fetal Intestine Small intestine
35 chr2:54087600-54100800 Weak transcription Brain Angular Gyrus brain
36 chr2:54087600-54110800 Weak transcription ES-WA7 Cell Line embryonic stem cell
37 chr2:54087600-54113600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
38 chr2:54087600-54116600 Weak transcription Pancreas Pancrea
39 chr2:54087600-54117000 Weak transcription Placenta Amnion Placenta Amnion
40 chr2:54087600-54187600 Weak transcription Stomach Mucosa stomach
41 chr2:54087800-54092000 Weak transcription H1 Cell Line embryonic stem cell
42 chr2:54087800-54092000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr2:54087800-54092000 Weak transcription Brain Germinal Matrix brain
44 chr2:54087800-54092200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr2:54087800-54092400 Weak transcription ES-I3 Cell Line embryonic stem cell
46 chr2:54087800-54112200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
47 chr2:54088000-54092400 Weak transcription Fetal Heart heart
48 chr2:54088000-54113800 Weak transcription Pancreatic Islets Pancreatic Islet
49 chr2:54088200-54092000 Weak transcription Brain Anterior Caudate brain
50 chr2:54088200-54092400 Weak transcription Cortex derived primary cultured neurospheres brain

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Last update: Aug 31, 2015