Variant report

Variant	rs805360
Chromosome Location	chr2:54164848-54164849
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:54157567..54166967-chr2:54194910..54201681,12	MCF-7	breast:
2	chr2:54156677..54159064-chr2:54162105..54166015,3	K562	blood:
3	chr2:54159943..54161728-chr2:54163948..54166249,2	K562	blood:
4	chr2:54151314..54153271-chr2:54161912..54164849,2	K562	blood:

Variant related genes	Relation type
ENSG00000068878	Chromatin interaction
ENSG00000170634	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11683654	0.93[CHB][hapmap]
rs13414393	0.87[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap]
rs1363062	0.86[GIH][hapmap]
rs1363063	0.81[CHB][hapmap]
rs1421617	0.87[CHB][hapmap];0.82[CHD][hapmap];0.86[GIH][hapmap]
rs2111868	0.93[CHB][hapmap];0.89[JPT][hapmap]
rs6749817	0.85[CHB][hapmap]
rs698858	0.81[ASN][1000 genomes]
rs718872	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs7569214	0.87[CHB][hapmap];0.82[CHD][hapmap];0.84[GIH][hapmap]
rs7569370	0.87[CHB][hapmap];0.82[CHD][hapmap];0.84[GIH][hapmap]
rs805308	0.87[CHB][hapmap]
rs805309	0.85[CHB][hapmap]
rs805317	0.83[ASN][1000 genomes]
rs805318	0.83[ASN][1000 genomes]
rs805320	0.84[ASN][1000 genomes]
rs805322	0.93[CHB][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs805328	0.83[YRI][hapmap]
rs805330	0.85[ASN][1000 genomes]
rs805341	0.87[CHB][hapmap];0.85[CHD][hapmap]
rs805351	0.83[YRI][hapmap]
rs805352	0.83[YRI][hapmap]
rs805358	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs805359	0.94[ASN][1000 genomes]
rs805361	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs805365	0.83[YRI][hapmap]
rs805367	0.93[CHB][hapmap]
rs805373	0.82[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap]
rs805374	0.93[CHB][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap]
rs805375	0.87[CHB][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap]
rs805391	0.83[ASN][1000 genomes]
rs805392	0.83[ASN][1000 genomes]
rs805393	0.83[ASN][1000 genomes]
rs805402	0.81[ASN][1000 genomes]
rs805405	0.81[ASN][1000 genomes]
rs805410	0.93[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs805412	0.93[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs805421	0.82[ASN][1000 genomes]
rs805422	0.84[ASN][1000 genomes]
rs805423	0.93[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs805424	0.84[ASN][1000 genomes]
rs805450	0.87[CHB][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap]
rs809280	0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs805360	ACYP2	cis	Muscle Skeletal	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54087000-54168000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr2:54087200-54176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:54087600-54187600	Weak transcription	Stomach Mucosa	stomach
4	chr2:54108200-54177400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:54109800-54179800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:54122200-54172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:54126200-54167600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:54135600-54172200	Weak transcription	Fetal Heart	heart
9	chr2:54139200-54176600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:54139200-54177000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:54139400-54167200	Strong transcription	Liver	Liver
12	chr2:54139400-54167800	Strong transcription	Dnd41	blood
13	chr2:54139400-54176200	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr2:54139600-54170800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr2:54139600-54177000	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:54141200-54166200	Strong transcription	Primary B cells from cord blood	blood
17	chr2:54141200-54167200	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr2:54141400-54166600	Strong transcription	NH-A	brain
19	chr2:54141400-54167400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:54141400-54167600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:54141400-54170600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:54141600-54167000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:54141600-54167000	Strong transcription	Osteobl	bone
24	chr2:54142000-54165000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr2:54142000-54165600	Strong transcription	Adipose Nuclei	Adipose
26	chr2:54142000-54167200	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr2:54142000-54167200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr2:54142200-54167200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr2:54142200-54167800	Strong transcription	HSMM	muscle
30	chr2:54142400-54166200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr2:54142400-54166600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr2:54143000-54166200	Strong transcription	HUVEC	blood vessel
33	chr2:54143000-54177600	Strong transcription	HepG2	liver
34	chr2:54143200-54167400	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr2:54143400-54165400	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr2:54143400-54167000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr2:54143400-54176200	Strong transcription	HMEC	breast
38	chr2:54144200-54166600	Strong transcription	Duodenum Mucosa	Duodenum
39	chr2:54144400-54166000	Strong transcription	Primary B cells from peripheral blood	blood
40	chr2:54144400-54167800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr2:54144600-54165000	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr2:54144600-54165800	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr2:54144600-54166200	Strong transcription	Placenta	Placenta
44	chr2:54144600-54166400	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr2:54144600-54167400	Strong transcription	Fetal Intestine Large	intestine
46	chr2:54145000-54165600	Strong transcription	Primary hematopoietic stem cells	blood
47	chr2:54145000-54165600	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr2:54145000-54166400	Strong transcription	Primary T cells from cord blood	blood
49	chr2:54145200-54165200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr2:54145600-54167400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links