Variant report

Variant	rs805361
Chromosome Location	chr2:54165846-54165847
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:54157567..54166967-chr2:54194910..54201681,12	MCF-7	breast:
2	chr2:54156677..54159064-chr2:54162105..54166015,3	K562	blood:
3	chr2:54165576..54167252-chr2:54193257..54196468,3	K562	blood:
4	chr2:54159943..54161728-chr2:54163948..54166249,2	K562	blood:
5	chr2:54160918..54162928-chr2:54165663..54167346,2	K562	blood:

Variant related genes	Relation type
ENSG00000170634	Chromatin interaction
ENSG00000068878	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10084355	0.83[AMR][1000 genomes]
rs10164409	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10201364	0.83[AMR][1000 genomes]
rs1421617	0.80[AMR][1000 genomes]
rs2111868	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2884254	0.82[AMR][1000 genomes]
rs2909460	0.82[AMR][1000 genomes]
rs6545376	0.80[AMR][1000 genomes]
rs6545378	0.84[AMR][1000 genomes]
rs6749817	0.80[AMR][1000 genomes]
rs698858	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs718872	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7569214	0.80[AMR][1000 genomes]
rs7571086	0.81[AMR][1000 genomes]
rs805308	0.84[AMR][1000 genomes]
rs805309	0.84[AMR][1000 genomes]
rs805317	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs805318	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs805320	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs805322	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs805330	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs805345	0.81[AMR][1000 genomes]
rs805358	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805359	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805360	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs805366	0.87[AMR][1000 genomes]
rs805367	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs805373	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs805374	0.84[ASN][1000 genomes]
rs805375	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs805379	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs805380	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs805391	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs805392	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs805393	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs805402	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs805405	0.86[ASN][1000 genomes]
rs805410	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs805412	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs805421	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs805422	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs805423	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs805424	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs805444	0.82[AMR][1000 genomes]
rs805450	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs805453	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs809280	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs805361	ACYP2	cis	Muscle Skeletal	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54087000-54168000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr2:54087200-54176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:54087600-54187600	Weak transcription	Stomach Mucosa	stomach
4	chr2:54108200-54177400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:54109800-54179800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:54122200-54172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:54126200-54167600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:54135600-54172200	Weak transcription	Fetal Heart	heart
9	chr2:54139200-54176600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:54139200-54177000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:54139400-54167200	Strong transcription	Liver	Liver
12	chr2:54139400-54167800	Strong transcription	Dnd41	blood
13	chr2:54139400-54176200	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr2:54139600-54170800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr2:54139600-54177000	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:54141200-54166200	Strong transcription	Primary B cells from cord blood	blood
17	chr2:54141200-54167200	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr2:54141400-54166600	Strong transcription	NH-A	brain
19	chr2:54141400-54167400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr2:54141400-54167600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:54141400-54170600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:54141600-54167000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:54141600-54167000	Strong transcription	Osteobl	bone
24	chr2:54142000-54167200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr2:54142000-54167200	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr2:54142200-54167200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr2:54142200-54167800	Strong transcription	HSMM	muscle
28	chr2:54142400-54166200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr2:54142400-54166600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr2:54143000-54166200	Strong transcription	HUVEC	blood vessel
31	chr2:54143000-54177600	Strong transcription	HepG2	liver
32	chr2:54143200-54167400	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr2:54143400-54167000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr2:54143400-54176200	Strong transcription	HMEC	breast
35	chr2:54144200-54166600	Strong transcription	Duodenum Mucosa	Duodenum
36	chr2:54144400-54166000	Strong transcription	Primary B cells from peripheral blood	blood
37	chr2:54144400-54167800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr2:54144600-54166200	Strong transcription	Placenta	Placenta
39	chr2:54144600-54166400	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr2:54144600-54167400	Strong transcription	Fetal Intestine Large	intestine
41	chr2:54145000-54166400	Strong transcription	Primary T cells from cord blood	blood
42	chr2:54145600-54167400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr2:54149800-54177000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr2:54150000-54166400	Strong transcription	Fetal Muscle Trunk	muscle
45	chr2:54150600-54167200	Strong transcription	Fetal Muscle Leg	muscle
46	chr2:54151000-54189800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr2:54153200-54179800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr2:54153400-54194600	Weak transcription	Fetal Brain Male	brain
49	chr2:54156600-54188000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr2:54156600-54190000	Weak transcription	Spleen	Spleen

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