Variant report

Variant	rs805412
Chromosome Location	chr2:54120820-54120821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:54119248..54120935-chr2:54124138..54125936,2	MCF-7	breast:
2	chr2:54118509..54120933-chr2:54123957..54126075,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10164409	0.81[EUR][1000 genomes]
rs11683654	0.88[CHB][hapmap]
rs1363062	0.80[CHB][hapmap]
rs1363063	0.88[CHB][hapmap]
rs1421617	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs17045439	0.91[JPT][hapmap]
rs2111868	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2302878	0.91[JPT][hapmap]
rs41385746	0.82[CHB][hapmap]
rs6749817	0.93[CHB][hapmap]
rs718872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7558126	0.82[CHB][hapmap]
rs7569214	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs7569370	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs805308	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs805309	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs805317	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs805318	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs805320	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs805322	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs805330	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs805341	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs805358	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs805359	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs805360	0.93[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs805361	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs805366	0.81[AMR][1000 genomes]
rs805367	1.00[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes]
rs805373	0.87[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs805374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs805375	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs805379	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs805380	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs805391	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs805392	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs805393	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs805402	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs805405	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs805410	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805421	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs805422	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs805423	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs805424	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs805430	0.82[AMR][1000 genomes]
rs805450	0.93[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes]
rs805453	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs809280	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs918207	0.81[CEU][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54087000-54168000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr2:54087200-54176000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:54087400-54137600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:54087600-54187600	Weak transcription	Stomach Mucosa	stomach
5	chr2:54088400-54137200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:54088600-54138000	Strong transcription	Primary B cells from peripheral blood	blood
7	chr2:54089800-54136000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr2:54090200-54137800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:54090200-54138200	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr2:54090400-54137600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:54090800-54137400	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr2:54091000-54137000	Strong transcription	Fetal Thymus	thymus
13	chr2:54091000-54137800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr2:54091000-54138000	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr2:54091200-54138000	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr2:54091400-54137600	Strong transcription	Liver	Liver
17	chr2:54093800-54124000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:54094000-54137800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr2:54099200-54137400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr2:54100400-54137800	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr2:54100400-54137800	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr2:54100400-54140200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr2:54100600-54123000	Strong transcription	Primary hematopoietic stem cells	blood
24	chr2:54100600-54137400	Strong transcription	Placenta	Placenta
25	chr2:54100600-54137800	Strong transcription	Primary B cells from cord blood	blood
26	chr2:54100600-54141200	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr2:54100800-54138000	Strong transcription	Fetal Muscle Trunk	muscle
28	chr2:54102000-54124400	Weak transcription	Small Intestine	intestine
29	chr2:54103800-54129200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr2:54104600-54135600	Strong transcription	Primary T cells from cord blood	blood
31	chr2:54105800-54137200	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr2:54106000-54138000	Strong transcription	Dnd41	blood
33	chr2:54106200-54138400	Strong transcription	Adipose Nuclei	Adipose
34	chr2:54106600-54137800	Strong transcription	Duodenum Mucosa	Duodenum
35	chr2:54107000-54123800	Strong transcription	HMEC	breast
36	chr2:54107200-54123000	Strong transcription	K562	blood
37	chr2:54107200-54123200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr2:54107200-54124200	Strong transcription	HepG2	liver
39	chr2:54108200-54137400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr2:54108200-54177400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr2:54108400-54135600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr2:54108400-54137400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr2:54108600-54135800	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr2:54108600-54137800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr2:54108800-54124000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr2:54108800-54137400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr2:54109000-54123600	Strong transcription	HSMM	muscle
48	chr2:54109200-54122800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr2:54109200-54123200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr2:54109200-54123800	Strong transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links