Variant report

Variant	rs805430
Chromosome Location	chr2:54075416-54075417
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10201364	0.80[AMR][1000 genomes]
rs13417926	0.85[EUR][1000 genomes]
rs13432632	0.89[CEU][hapmap]
rs1421617	0.81[CEU][hapmap]
rs2111623	0.92[CEU][hapmap]
rs2111868	0.92[CEU][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2160931	0.89[CEU][hapmap]
rs2357693	0.92[CEU][hapmap]
rs2542574	0.88[EUR][1000 genomes]
rs2542576	0.89[EUR][1000 genomes]
rs2542579	0.84[EUR][1000 genomes]
rs2692518	0.88[EUR][1000 genomes]
rs2884254	0.81[AMR][1000 genomes]
rs3821081	0.89[CEU][hapmap]
rs6708095	0.93[CEU][hapmap]
rs6738369	0.80[EUR][1000 genomes]
rs698854	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs698858	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs718872	0.93[CEU][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7569214	0.81[CEU][hapmap]
rs7569370	0.81[CEU][hapmap]
rs7596349	0.96[CEU][hapmap]
rs7601692	0.85[CEU][hapmap]
rs805309	0.80[CEU][hapmap]
rs805317	0.82[AMR][1000 genomes]
rs805318	0.82[AMR][1000 genomes]
rs805322	0.92[CEU][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs805341	0.85[CEU][hapmap]
rs805359	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs805366	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs805367	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs805373	0.86[JPT][hapmap];0.88[AMR][1000 genomes]
rs805374	1.00[CEU][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs805375	1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs805379	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs805380	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs805391	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs805392	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs805393	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs805396	0.84[AMR][1000 genomes]
rs805402	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs805405	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs805410	0.85[CEU][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs805412	0.87[JPT][hapmap];0.82[AMR][1000 genomes]
rs805421	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs805423	0.89[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs805424	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs805433	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs805436	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs805438	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs805439	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs805441	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs805444	0.81[EUR][1000 genomes]
rs805450	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs805453	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs809280	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs805430	ACYP2	cis	Muscle Skeletal	GTEx

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54025800-54085600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:54046600-54080200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:54046600-54080200	Weak transcription	NHDF-Ad	bronchial
4	chr2:54046800-54080400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:54047000-54080200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr2:54047000-54080200	Weak transcription	A549	lung
7	chr2:54047000-54080400	Weak transcription	Gastric	stomach
8	chr2:54047000-54080400	Weak transcription	Pancreas	Pancrea
9	chr2:54047000-54080800	Weak transcription	Aorta	Aorta
10	chr2:54047200-54077000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr2:54047200-54080000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr2:54047200-54080200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr2:54047200-54080200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr2:54047200-54080200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr2:54047200-54080400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr2:54047200-54080400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:54047200-54080800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr2:54047600-54080400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr2:54047600-54080800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr2:54050200-54080400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:54050400-54080200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr2:54050600-54080200	Weak transcription	Fetal Stomach	stomach
23	chr2:54051000-54080000	Weak transcription	Osteobl	bone
24	chr2:54054000-54080400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:54054400-54080400	Weak transcription	NHLF	lung
26	chr2:54055200-54080400	Weak transcription	Ovary	ovary
27	chr2:54055200-54081000	Weak transcription	Psoas Muscle	Psoas
28	chr2:54055400-54076400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr2:54055400-54080000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:54056200-54080200	Weak transcription	Fetal Muscle Leg	muscle
31	chr2:54056800-54080200	Weak transcription	Brain Substantia Nigra	brain
32	chr2:54057200-54080200	Weak transcription	Brain Angular Gyrus	brain
33	chr2:54057200-54080200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr2:54057200-54080200	Weak transcription	Fetal Brain Female	brain
35	chr2:54057200-54080200	Weak transcription	Left Ventricle	heart
36	chr2:54057400-54080200	Weak transcription	Brain Hippocampus Middle	brain
37	chr2:54060000-54080200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr2:54060000-54080200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr2:54060200-54080200	Weak transcription	Primary T cells from cord blood	blood
40	chr2:54061600-54080200	Weak transcription	Primary B cells from cord blood	blood
41	chr2:54063200-54078200	Weak transcription	Adipose Nuclei	Adipose
42	chr2:54063200-54080000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr2:54063200-54080400	Weak transcription	Esophagus	oesophagus
44	chr2:54063400-54080200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr2:54063400-54080200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr2:54063400-54080200	Weak transcription	Lung	lung
47	chr2:54064000-54080200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr2:54064400-54077400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr2:54064800-54080200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr2:54065400-54077400	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links